Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0821 ATGGATCAAAGTTGCGCCGCTCTCTCATTCCCGCGTCTCGCATTATTCACCTTCAGTCGGATCAGGATGGAGACTCAGGCCAAGCATGTTGTGGTTGTTAAAGTTATCGGTCGTACTGGTTCCAGAGGGCAGGTGACTCAGGTTAGAGTCAAGTTTTTGGATGATCACAACCGGTATATCATGAGGAATGTGAAAGGACCAGTGAGAGAAGGAGACATTCTCACCCTTCTTGAGTCTGAAAGAGAAGCAAGGAGATTGCGCTAG 264 0.4811 MDQSCAALSFPRLALFTFSRIRMETQAKHVVVVKVIGRTGSRGQVTQVRVKFLDDHNRYIMRNVKGPVREGDILTLLESEREARRLR 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0821 87 FunFam 40S ribosomal protein S28 21 87 - -
Lele08g0821 87 Hamap 30S ribosomal protein S28e [rps28e]. 23 87 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lele08g0821 87 ProSitePatterns Ribosomal protein S28e signature. 78 86 IPR028626 -
Lele08g0821 87 SUPERFAMILY Nucleic acid-binding proteins 23 87 IPR012340 -
Lele08g0821 87 Pfam Ribosomal protein S28e 26 86 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lele08g0821 87 CDD S1_S28E 28 87 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lele08g0821 87 PANTHER 40S RIBOSOMAL PROTEIN S28 23 87 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lele08g0821 87 Gene3D - 22 87 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0821 Lele-ChrLele08 5154889 5156261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0821 23 87 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 86.154 3.38e-34 110