Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0811 ATGAAAACGTGCGAGAAGACGAAAATGAGAGAGAGAGGATCTGGCGACCTAAATCTATGCTACGATGTGGAGAAGACGAACGAAAGGAGGATGCACGCCGCCATCAACGCCCGACTAAGCTCCGCTAGTGACATAATTGCCGGCGACCCAAATCTGCACTGCGTTGGGGTTCTTCTTCACCAGACTATGACTGTGGGCGGCGATGGAAAAGGGAAGAGTATTGATACCGTTGAGAAATCTAAATATCTTTTGACAAAAAGGAGAGAGAGCGATATCTTCGCAAGGGGTTCAACCCGGTTTCAAAGTTCATCTGTTTTTCAATTCTGCTACAATCGAAGCTCGTTTCTATACATCATTCATCACTTGCTCTCTCTTCCTGGTAGTTATCATCCGTTCGCTTTGTCTATTGGCATAGTAGTATTTTCCATCGGGAAGCCGAGTTGCTTTTTGACATTTCCTTGTAATCAACGAAGTCAAATATCTGCAGCTATGAGAACTTCATGGGCAGATTCTGTTGACAACTCAGCCATTGGTTCTTCAAATGCCAATGCGGCGCGTCCTTCTCGGTCAGCATATGTTCCACCACATCTTCGTAATAAGCCACCATCTTCAGAACCCCATATGACATCACACCCATCTTCGTTACCGGCGAATGATCGGGTAAATTTTGGCGGGTCAACTGCTGGTTATCGCGGTGCTGGTTCCTTTAATAAGCCTGACCATGGAAGGCAGGACTATGGTTCTAATGGTCGAATTGGTGGAGGTTGGAACAATAGAAGCGGAGGGTGGGACCGTGGAAGGGAGCGTGAGGTTAACCCATTTGAGAATGATGAAGCTACAGATCATACTTATAGCGAGCAAGAAAACACAGGCATTAATTTCGACGCTTATGATGATATCCCTGTGGACACTAGTGGGGATAATGTGCCTCCACCTGTAAATACTTTTGCAGAAATAGACTTGGGGGAGGCAGTGAATCAAAATATAAGGAGGTGTAAATACGTCAAACCAACTCCAGTTCAGAAGTACGCCATACCAATTTCTCTTGCGGGGCGAGATCTGATGGCTTGCGCTCAGACAGGATCAGGCAAGACAGCTGCCTTCTGTTTTCCTATCATAAGTGGAATCCTGAGGATGCCGCATGTTCAAAGACCACGTGTAGCACGAACTGCTTTCCCTCTGGCTCTTATCCTATCTCCTACCCGGGAGCTTTCCTGTCAGATACATGACGAGGCTAAAAAGTTTTCCTATCAAACTGGTGTTAAGGTGGTAGTTGCTTATGGAGGAGCACCAATAAACCAACAGTTGCGGGAGCTTGAGAGAGGAGTTGATATTCTTGTGGCAACTCCAGGACGTCTGGTAGATTTGTTAGAGAGGGCTAGGGTGTCACTGCAAATGATCAGATATTTAGCTCTCGATGAGGCAGATCGGATGCTGGATATGGGGTTTGAGCCTCAAATAAGAAAAATAGTTGAACAAATGGACATGCCTCCTCAAGGCATGAGACAAACAATGCTGTTTAGTGCCACTTTTCCCAAAGAGATACAGAGACTTGCATCAGATTTCCTCGACAATTATGTGTTTCTGGCTGTTGGAAGGGTCGGTTCAAGTACTGACCTAATTGCTCAACGAGTGGAATATGTCTTGGAATCTGACAAAAGAAGCCACCTCATGGACCTTCTTCATGCCCAGAGGGAAAATGGACTTTATGGCAAGCAAGGTCTGACATTAGTTTTTGTGGAAACAAAGAAAGGAGCTGATGCATTGGAACACTGGTTGTGCATTAATGGGTTTCCTGCAACTAGCATTCATGGTGACCGATCACAGCAGGAAAGGGAACTAGCATTGAGGTCGTTCAAGAGTGGAAACACACCAATTTTAGTGGCAACAGATGTTGCAGCGCGTGGTCTTGATATTCCACGTGTAGCTCATGTGGTAAATTTTGATCTTCCCAATGACATTGATGATTATGTGCATCGAATAGGAAGAACAGGGAGGGCCGGTAAAATGGGTTTAGCAACAGCCTTCTTCAATGACAATAATCTGTCATTGGCTAAGCCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTACCTGCCTGGCTCACACGTTATGCAGCTAGATCTTCCTATGGTGGTGGCAACAGAAACCGGCGTTCAGGGGGAGCTCGTTTCGGTGGCCGTGATTATAGGAGGGACAACCAACATAATAAAGGAGCTGACTACTATGGGGGAACAAGTGGATACGGTGTTCCTGCCACTTATGGTGGAGTTTATGGTCCTCCAGGGGTTACTAGCGCTTGGGATTAG 2313 0.4609 MKTCEKTKMRERGSGDLNLCYDVEKTNERRMHAAINARLSSASDIIAGDPNLHCVGVLLHQTMTVGGDGKGKSIDTVEKSKYLLTKRRESDIFARGSTRFQSSSVFQFCYNRSSFLYIIHHLLSLPGSYHPFALSIGIVVFSIGKPSCFLTFPCNQRSQISAAMRTSWADSVDNSAIGSSNANAARPSRSAYVPPHLRNKPPSSEPHMTSHPSSLPANDRVNFGGSTAGYRGAGSFNKPDHGRQDYGSNGRIGGGWNNRSGGWDRGREREVNPFENDEATDHTYSEQENTGINFDAYDDIPVDTSGDNVPPPVNTFAEIDLGEAVNQNIRRCKYVKPTPVQKYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILRMPHVQRPRVARTAFPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPQGMRQTMLFSATFPKEIQRLASDFLDNYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENGLYGKQGLTLVFVETKKGADALEHWLCINGFPATSIHGDRSQQERELALRSFKSGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNDNNLSLAKPLADLMQEANQEVPAWLTRYAARSSYGGGNRNRRSGGARFGGRDYRRDNQHNKGADYYGGTSGYGVPATYGGVYGPPGVTSAWD 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0811 770 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 345 529 IPR014001 -
Lele08g0811 770 SMART ultradead3 333 544 IPR014001 -
Lele08g0811 770 MobiDBLite consensus disorder prediction 723 739 - -
Lele08g0811 770 FunFam ATP-dependent RNA helicase RhlB 532 711 - -
Lele08g0811 770 MobiDBLite consensus disorder prediction 177 267 - -
Lele08g0811 770 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 282 707 - -
Lele08g0811 770 MobiDBLite consensus disorder prediction 203 221 - -
Lele08g0811 770 Pfam Helicase conserved C-terminal domain 553 668 IPR001650 -
Lele08g0811 770 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 314 342 IPR014014 GO:0003724
Lele08g0811 770 CDD DEADc_DDX3_DDX4 315 535 IPR044763 GO:0003724|GO:0005524
Lele08g0811 770 Gene3D - 269 531 IPR027417 -
Lele08g0811 770 SMART helicmild6 587 668 IPR001650 -
Lele08g0811 770 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 556 707 IPR001650 -
Lele08g0811 770 CDD SF2_C_DEAD 541 677 - -
Lele08g0811 770 MobiDBLite consensus disorder prediction 712 744 - -
Lele08g0811 770 Pfam DEAD/DEAH box helicase 338 518 IPR011545 GO:0003676|GO:0005524
Lele08g0811 770 Gene3D - 532 712 IPR027417 -
Lele08g0811 770 FunFam Probable ATP-dependent RNA helicase DDX4 276 531 - -
Lele08g0811 770 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 394 683 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0811 Lele-ChrLele08 5096506 5102842 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0811 298 700 Eukaryotic Initiation Factors Gene Family AT3G19760 31.773 1.85e-60 208