Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0804 ATGGACAAGTCGGACAGAGAGACTCATGACTTCATGAACGTTCAGTCCTTCTCCCAGCTTCCTTTTATCCGTCCTACTCCTCACAAAGAGAAGCCCGTTAAGCTCTTCGGCATTGAATTCCCCAACGCCGACTCTCCTAATTCCGCCCCCGATGATGCTCCCTCCTCCGGCGCTACCACCACCAACAATAATGCTTTTGACCTTGATTCCAAGGACTCCTCCTCCACCGCCGCCCCCGACAATGCCGAAACCAGCCGCCGGTTCGAATGCCAATACTGTTGTAGAAACTTCCCCACCTCTCAGGCCTTAGGTGGTCACCAAAACGCCCATAAACGAGAGCGTCAGCACGCCAAGCGAGCCCACCTTCAGTCTGCCATGGTGCACAATAGCCTCTCCGTCGACACCGCCGCTCATGTCTATGGCCTCATGAACTACCGCCTCGGCTCCACCGCCCCATACCCCGCCTGGCATAATAGTAACTCTGCCGGTGGAAGGTTTTACGGGAGCCATGGCGCCAGCTCGTATCCTCATCTGCAACCCATCAACGGTAGCCCCTTAGCCTTGTGGCGGATACCCGCCACCGTCCAAAATAACCCTACTACGACTTTCAACCGCGACCGTTCGTTGCACTTACAGCATCCGTTGCCATTGCTTGCCGGCGACGAAATTAACGTCGGGGCTTCTCATCATCCGGACGTCGGTTCCGCTTCGCAGAATCGCCTCGTTTATGACTCTAAACCCGGCGTTCACGACCATGTGAGTTTGGATCTTCACCTGTGA 780 0.5564 MDKSDRETHDFMNVQSFSQLPFIRPTPHKEKPVKLFGIEFPNADSPNSAPDDAPSSGATTTNNNAFDLDSKDSSSTAAPDNAETSRRFECQYCCRNFPTSQALGGHQNAHKRERQHAKRAHLQSAMVHNSLSVDTAAHVYGLMNYRLGSTAPYPAWHNSNSAGGRFYGSHGASSYPHLQPINGSPLALWRIPATVQNNPTTTFNRDRSLHLQHPLPLLAGDEINVGASHHPDVGSASQNRLVYDSKPGVHDHVSLDLHL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0804 259 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Lele08g0804 259 MobiDBLite consensus disorder prediction 1 82 - -
Lele08g0804 259 Pfam C2H2-type zinc finger 87 112 - -
Lele08g0804 259 MobiDBLite consensus disorder prediction 48 82 - -
Lele08g0804 259 PANTHER ZINC FINGER PROTEIN GIS 1 259 IPR044291 GO:0003700|GO:0009739|GO:0010026|GO:0010090
Lele08g0804 259 Gene3D Classic Zinc Finger 68 139 - -
Lele08g0804 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Lele08g0804 259 SUPERFAMILY beta-beta-alpha zinc fingers 85 116 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0804 Lele-ChrLele08 5059370 5060149 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0804 1 259 C2H2 Transcription Factor Family AT2G41940 40.569 8.08e-45 150
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0804 08 5059370 5060149 Lele13g1573 13 24795692 24798895 CCT
Lele08g0804 08 5059370 5060149 Lele15g0851 15 4941621 4946028 CCT
Lele08g0804 08 5059370 5060149 Lele08g0804 08 5059370 5060149 ECH
Lele05g0951 05 5885509 5886288 Lele08g0804 08 5059370 5060149 hybridization
Lele06g0816 06 5026493 5027272 Lele08g0804 08 5059370 5060149 hybridization