Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele08g0793 | ATGGAGTTGGCCTTGAGCTTAGGAGACGCACCAAAGCCCTCCTCTTTTCTTGACAAGCTCGCCAATATGCCCCGCCAAGAACCTACCTTTTGCATACCCCTCGCCGCCGCTGCAAGATGGAATCATCCCAGAGAAGAAGACGAAGACCTTCGGACCTCATCTGCTCCGCCCATTCAGCTCGATCTTCTTCCCTTCACCCCGCTTCCTCCTCCACCTCCGCGCCTTTCAATTCCCTGGCTCTCTCGTCCATTGGGTGGCGAAGATATTTCATCCGATAGAGTAGTGACTGCGAGGGGTTTGGATGTGAACAGTGCGCCGGCAGACGTAGATGAGGCCGACGACTCTGCGGCACTCTCATCTCCCAACAGTGAGATTTCATCATTTCACATGGATTTCCGCGTCGGAAATAGTCATGGCACCGGCAGTTACAAGAGAGAGCACGATGTCAACGCCGACAGACGCAGCGACGATGACGAAAACGGATCAACTCGCAAGAAACTCCGACTGTCTAAGGAACAGTCCGCTTTCCTCGAAGAGAGCTTCAAAGAACACGCCACTCTCAATCCAAAGCAGAAATTTGCTCTGGCGAAGCAGTTAAACCTTCGTCCTCGTCAAGTGGAAGTTTGGTTCCAAAATAGACGTGCCAGGACGAAATTGAAGCAGACGGAAGTAGATTGTGAGTATTTGAAGAGATGTTGCGAGACGCTGACGGAGGAGAATAGGAGGCTACAGAAGGAGGTGCAAGAATTAAGGGCTTTAAAGACATCGCAGCCGTATTACATGCAGCTTCCGGCCACCACTCTCACCATGTGTCCCTCCTGTCAAAGGGTCGTTACAAAATCTTCAGCGCCGGAACCACATCCACAGCGACGGCGACCGCCACTTGCCCCAGCAGTGTCTCTCGAATCCCGGTAG | 915 | 0.5279 | MELALSLGDAPKPSSFLDKLANMPRQEPTFCIPLAAAARWNHPREEDEDLRTSSAPPIQLDLLPFTPLPPPPPRLSIPWLSRPLGGEDISSDRVVTARGLDVNSAPADVDEADDSAALSSPNSEISSFHMDFRVGNSHGTGSYKREHDVNADRRSDDDENGSTRKKLRLSKEQSAFLEESFKEHATLNPKQKFALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKEVQELRALKTSQPYYMQLPATTLTMCPSCQRVVTKSSAPEPHPQRRRPPLAPAVSLESR | 304 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele08g0793 | 304 | Pfam | Homeodomain | 164 | 218 | IPR001356 | GO:0003677 | |
| Lele08g0793 | 304 | SMART | halz | 220 | 263 | IPR003106 | GO:0006355|GO:0043565 | |
| Lele08g0793 | 304 | FunFam | Homeobox-leucine zipper protein 18 | 147 | 225 | - | - | |
| Lele08g0793 | 304 | Pfam | HD-ZIP protein N terminus | 58 | 128 | IPR006712 | GO:0005634 | |
| Lele08g0793 | 304 | ProSiteProfiles | 'Homeobox' domain profile. | 160 | 220 | IPR001356 | GO:0003677 | |
| Lele08g0793 | 304 | Coils | Coil | 226 | 256 | - | - | |
| Lele08g0793 | 304 | MobiDBLite | consensus disorder prediction | 140 | 166 | - | - | |
| Lele08g0793 | 304 | CDD | homeodomain | 164 | 221 | IPR001356 | GO:0003677 | |
| Lele08g0793 | 304 | MobiDBLite | consensus disorder prediction | 137 | 166 | - | - | |
| Lele08g0793 | 304 | ProSitePatterns | 'Homeobox' domain signature. | 195 | 218 | IPR017970 | GO:0000981|GO:0006355 | |
| Lele08g0793 | 304 | SUPERFAMILY | Homeodomain-like | 156 | 221 | IPR009057 | - | |
| Lele08g0793 | 304 | Gene3D | - | 168 | 218 | - | - | |
| Lele08g0793 | 304 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 49 | 285 | - | - | |
| Lele08g0793 | 304 | SMART | HOX_1 | 162 | 224 | IPR001356 | GO:0003677 | |
| Lele08g0793 | 304 | MobiDBLite | consensus disorder prediction | 279 | 304 | - | - | |
| Lele08g0793 | 304 | Pfam | Homeobox associated leucine zipper | 220 | 254 | IPR003106 | GO:0006355|GO:0043565 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele08g0793 | Lele-ChrLele08 | 4965949 | 4967199 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele08g0793 | 57 | 290 | Homeobox Transcription Factor Family | AT5G47370 | 54.065 | 5.35e-71 | 219 |
Transcription factors information