LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele08g0792	ATGGGGGAAGAGACATCGGACGCGATGAACCTTGATTTGAATCTGGGTCCTGATCCAGAGCCAGCAGCTGGCTCCATAACCAATGAATCCGTGAGCTTAGAGGATTGGATTGAAGAGCCTAGGGTTAGCGAAGCAGTTAGACATAGGACTCGACAGAGGTGGAGATGGCGGCATCTTCACATTAATCCTCCTGAACCCCAACGTAGCTTTATTTTTTCGCCTGAAGTCCAACATATCTCAATGGAATTGAATCATTTGTTGGCCAACCCTCGTAATGGAGGTGCGTTTCAGGCTGGGGAAGGTAGCGTGGCAGCTGAAGATAGAACAGAGGTGGCACCAAAAGCATGTGAGACAAACAATGGTGTTACGGAGGATGAAGCATCAGATAAGAAGGATGATGTTGAGAAGGGTAGTGGAAATGATGGGAGCTTTTTTGATTGTAACATCTGTTTGGACTTGGCTAGAGATCCTGTTGTGACTTGCTGTGGTCATTTGTTTTGTTGGCCATGCCTCTATAGGTGGCTACATGTCCATTCAGATGCTAAGGAATGTCCAGTTTGCAAGGGAGAGGTATCATTTAAAAATGTTACGCCAATTTATGGTCGTGGAAACAATGTCCGTCAACCTGAGGAAGATCCTACTCTCAAAGTCCCTCTTAGACCCCATGCTAGACGTGTTGAAAGTCTGAGACAAACCATTCATCGAAATGCATTTGCATTCCCAGTGGAAGAGATGATTCGGCGTCTTGGGAGTAGATTCGATCTCTCTCGAGATGAAGGCCAGCCGCATGAGCCTGACAATGCCAGGGAAGCAGCCGACAGAACCACTACCTTGTTAAATAGATTTTTGACCTCTCGAGCATTACGGAGAGAGCATATTCATGGGGCAACTGCAGATGATGTAGTGGATTTAACTCAAAACAACATTGGTGGCCCTGAGGCAGGGGATAACCGCAGGGTTCAATCCCTTTTACTTCGAAGAACACAGTCACATAGAACAACACTTTCTTCTCTTTCATCAGCTCTGAGTTCCGCTGAGAGATTTGTGGAGGCATACATCCGTAGCCGTTCTATAGGTAGAAACCAAGAGCAGCCTCCACCGGTGGATGATAGAGATTCCTTTTCAAGTGTTGCTGCTGTCATACACTCAGAGAGTCAAGTAGACACTAATGTAGAAATTGATTCCATGGTATCCTTGTCAACATCCTCTTCCAGGAGGAGAAATGACGCATCTCGGGTTTCTGATGTGGATAGTGGAGATTCTCGGGCTTCAAGGCGAAGACGTTTGAACTGA	1293	0.464	MGEETSDAMNLDLNLGPDPEPAAGSITNESVSLEDWIEEPRVSEAVRHRTRQRWRWRHLHINPPEPQRSFIFSPEVQHISMELNHLLANPRNGGAFQAGEGSVAAEDRTEVAPKACETNNGVTEDEASDKKDDVEKGSGNDGSFFDCNICLDLARDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVSFKNVTPIYGRGNNVRQPEEDPTLKVPLRPHARRVESLRQTIHRNAFAFPVEEMIRRLGSRFDLSRDEGQPHEPDNAREAADRTTTLLNRFLTSRALRREHIHGATADDVVDLTQNNIGGPEAGDNRRVQSLLLRRTQSHRTTLSSLSSALSSAERFVEAYIRSRSIGRNQEQPPPVDDRDSFSSVAAVIHSESQVDTNVEIDSMVSLSTSSSRRRNDASRVSDVDSGDSRASRRRRLN	430

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele08g0792	430	MobiDBLite	consensus disorder prediction	253	272	-	-
	Lele08g0792	430	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED	121	327	IPR045103	GO:0005783\|GO:0006511\|GO:0061630
	Lele08g0792	430	ProSitePatterns	Zinc finger RING-type signature.	162	171	IPR017907	-
	Lele08g0792	430	ProSiteProfiles	Zinc finger RING-type profile.	147	188	IPR001841	-
	Lele08g0792	430	FunFam	E3 ubiquitin-protein ligase RMA3	115	236	-	-
	Lele08g0792	430	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	116	233	IPR013083	-
	Lele08g0792	430	MobiDBLite	consensus disorder prediction	408	430	-	-
	Lele08g0792	430	MobiDBLite	consensus disorder prediction	123	137	-	-
	Lele08g0792	430	SMART	ring_2	147	187	IPR001841	-
	Lele08g0792	430	CDD	RING-HC_AtRMA_like	145	189	-	-
	Lele08g0792	430	Pfam	Zinc finger, C3HC4 type (RING finger)	147	187	-	-
	Lele08g0792	430	MobiDBLite	consensus disorder prediction	253	271	-	-
	Lele08g0792	430	MobiDBLite	consensus disorder prediction	115	137	-	-
	Lele08g0792	430	SUPERFAMILY	RING/U-box	143	200	-	-
	Lele08g0792	430	MobiDBLite	consensus disorder prediction	398	430	-	-
	Lele08g0792	430	MobiDBLite	consensus disorder prediction	1	26	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele08g0792	Lele-ChrLele08	4955910	4957202	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele08g0792	1	421	C3H Transcription Factor Family	AT3G58030	54.072	2.63e-136	396

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele08g0792	08	4955910	4957202	Lele08g0792	08	4955910	4957202	ECH
	Lele05g0937	05	5764713	5766005	Lele08g0792	08	4955910	4957202	hybridization
	Lele06g0804	06	4932686	4934538	Lele08g0792	08	4955910	4957202	hybridization