Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0779 ATGGATGCTCGCAAGAGAGGGAGGCCCGAGGCTGGCTTCAACGTTAACGGTGGCCTCAAGAAGACCAAGCAAGGTGATACAGTTAGGTGTATATTGTATATATTGATTGAAAATGTTAATTTGTGTATGCTAACAGCCTGTGATGTCCTTCTGGGTTTTAATATCATGCTGGAATTTCTTCCCGAGTTTCACGAGAATGTTGGATACTTTGCTACTAATGAATGTCGCACTGCTGGCTGCCCTTTTGGAGAGGGTTGCCACTTCTTGCACTATGTTCCTGGTGGTTATAACGCTGTTGCTCAGATGATGAATTTAGCCCCTGTTGCTCCTGCTGCTTCTAGATATGTTGTAGCCCCATCACCGGTTCATAACGGCTCCACTCCTGCTGTCAAAACTCGCATATGCAATAAATTTAATTCTGCAGAAGGCTGCAAATTTGGTGATAAGTGTCATTTTGCACATGGTGAATTGGATCTATTGCAGTTCCGTATAGCTCCCAACCGAATGGAGCCCCCACCTGGTCCTATGGCTAGTTTCGGCGCCAATGCCACTGCCAAGATCAGTGTAGAGGCATCCTTAGCTGGAGCAATCATTGGGAAGGGTGGTGTAAACTCTAAGCAGATCTGTCGCAAAACAGGAGCCAAACTATCAATTCGGGATCATGAGTCAGATCCAAATCTCAGAAACATTGAACTTGAGGGAAGCTTTGAACAAATTAAGGAAGCTAGTAACATGGTGAAAGAGTTGCTTGCAACCATCTCAATGTCTGCATCACCTAAAATCCCCGGTGGAAGCAATTATAAGACCAAGTTGTGTGAGAACTTTGCCAAAGGATCTTGTACCTTCGGAGATAGATGTCATTTTGCACATGGGGCTTCCGAACTGCGTAAAACAATAATTTCAATTGAATCTGTAGGTGTTCTCATTAGGTTTGTTGAATTGGCTAGAGGGCGTGGTCCTGAGATTTCTAATCAAGACTGGTCCCGTTTCCTGTACGGACTTGCACTGTTTCCTCTACGGTGTTTTTTCTTGTGCATGTTTTTCGATTCTGTTCTGTTGGATCGTTGGCGTCATATTAGGATTAGTAATCAATAA 1095 0.4402 MDARKRGRPEAGFNVNGGLKKTKQGDTVRCILYILIENVNLCMLTACDVLLGFNIMLEFLPEFHENVGYFATNECRTAGCPFGEGCHFLHYVPGGYNAVAQMMNLAPVAPAASRYVVAPSPVHNGSTPAVKTRICNKFNSAEGCKFGDKCHFAHGELDLLQFRIAPNRMEPPPGPMASFGANATAKISVEASLAGAIIGKGGVNSKQICRKTGAKLSIRDHESDPNLRNIELEGSFEQIKEASNMVKELLATISMSASPKIPGGSNYKTKLCENFAKGSCTFGDRCHFAHGASELRKTIISIESVGVLIRFVELARGRGPEISNQDWSRFLYGLALFPLRCFFLCMFFDSVLLDRWRHIRISNQ 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0779 364 ProSiteProfiles Type-1 KH domain profile. 182 246 - -
Lele08g0779 364 SUPERFAMILY CCCH zinc finger 265 297 IPR036855 GO:0046872
Lele08g0779 364 PANTHER CCCH ZINC FINGER/TIS11-RELATED 70 178 IPR045877 GO:0003729
Lele08g0779 364 SUPERFAMILY CCCH zinc finger 128 159 IPR036855 GO:0046872
Lele08g0779 364 SMART kh_6 181 251 IPR004087 GO:0003676
Lele08g0779 364 CDD KH-I 184 247 - -
Lele08g0779 364 FunFam Zinc finger CCCH domain-containing protein 124 161 - -
Lele08g0779 364 ProSiteProfiles Zinc finger C3H1-type profile. 266 293 IPR000571 GO:0046872
Lele08g0779 364 Pfam KH domain 185 248 IPR004088 GO:0003723
Lele08g0779 364 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 267 291 IPR000571 GO:0046872
Lele08g0779 364 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 131 156 IPR000571 GO:0046872
Lele08g0779 364 SMART c3hfinal6 129 156 IPR000571 GO:0046872
Lele08g0779 364 SMART c3hfinal6 71 92 IPR000571 GO:0046872
Lele08g0779 364 SMART c3hfinal6 266 292 IPR000571 GO:0046872
Lele08g0779 364 Gene3D K Homology domain, type 1 179 267 IPR036612 GO:0003723
Lele08g0779 364 ProSiteProfiles Zinc finger C3H1-type profile. 129 157 IPR000571 GO:0046872
Lele08g0779 364 Gene3D - 268 298 - -
Lele08g0779 364 Gene3D - 123 161 - -
Lele08g0779 364 FunFam Zinc finger CCCH domain-containing protein 262 297 - -
Lele08g0779 364 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 171 252 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0779 Lele-ChrLele08 4873814 4877914 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele08g0779 KH_1 3.4e-12 CL0007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1541 13 24590308 24593823 Lele08g0779 08 4873814 4877914 CCT
Lele14g1461 14 22974390 22981412 Lele08g0779 08 4873814 4877914 CCT
Lele15g0884 15 5133857 5136900 Lele08g0779 08 4873814 4877914 CCT
Lele05g0924 05 5686009 5690678 Lele08g0779 08 4873814 4877914 hybridization
Lele06g0784 06 4852944 4861936 Lele08g0779 08 4873814 4877914 hybridization