Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0776 ATGGATATCAATCAGGCCTGGAATATGGGAAGTTGCAGCCAAACGCTCGCTGGAGGAGGAGCCCAACAACAACCACCACCACCACCACCAAACCAAGGCGGCCCTGCAAAATCCTCCGCCACCATCATGAGCCGTTTTGAATCTCCAGCTTCTGCTTTCTACGCCACAGAACGATGCATGGGGTTTCAGGTTCAGCAATATGAATCCCAGCTTGGTAATCCCTCTTTGACCTCTCAGTTCTCCAAGCTTAACGACTTGGATTTCCCTCTTTATCAGTCTGATCCCAGCTTCGAATCGTCCAATAATACCCTGCAAGCAATGGTGATGAAATCTCCATTGAGGAGTAACCAATACTCAATGAAATCCCCTGAGAAATCCAATAAATTTTCTTATGGGAGTTTGCCCACCACCAAGTTTCTTCCTTTTCAACAACACAGCTTGTTTATTAACGATTCTGCCTCAGTTAATATGAACTCTCCTTATATGGGAAATCAGGATCATACGGTTGGTCTTGGCTCATATAATTTACATGTTGATCAGATGAGTTTCTCTTCTCAGCAAGACAATAAGCTGTCTCCACCACTTACATCAGAAGCGAGTGTGCCAGCTGTTTCTGGCAATCAGAATTCCAATGGGACAACGGTCTCAAGCAAAACTCGTATTAGGTGGAACCAGAATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGAGGTGCTGAAAAAGCGACACCAAAAGCTATATTAAAGCTGATGGACTCCGATGGATTGACCATCTTCCATGTGAAGAGCCATTTGCAGAAATACAGAATTGCAAAATACATGCCAGACTCAGCTCAAGGAAAGTCTGATAAAAGATCCAATGTAGAAGATGCGCACCATCATCTTGACACCAAAACTGGTTTGCCGTTAAGAGAGGCACTTCAGCTGCAATTAGATGTCCAAAGGCGCCTTCATGAACAGCTAGAGATTCAGAGAAAGTTGCAGTTGAGAATTGAGGAACAGGGGAGGCAGCTGAAGATGATGTTTGATCAGCAGCAAAAGACGAGTGATAGCCTCAAGAATACTCAGAATTTGACCAGCACAGCCAATGATAATAATAGCGATAGATCAAATAATCATAAAGTTTTTGAATTATCAACTTCTGAAGGGTCTGGAAATTCTTTCTTCCATTCCAAGATAAGCGAAGCCAATCTTGTAGAGCGGAGAGGAGGAACCGACGCCGAGATGGATGATTTCAAAAAGAGAAAGCTAGAAGAGGCCGGCAACGGCGATGCTTCTTCAAAGGAAGAGCTTCGCTTTCTCCTTGACCCGCTGGCCAAGCCCCAGCTTGTTGATCTTCTCGCTAAACTAGGGTCCCAATATCCTTCAATTGCAGAAGAAATAAAAAGTATAGCAAGTGCAGATCCTGTCCATCGAAAGCTTTTTGTTCGTGGCTTGGCCTGGAATACCAGTTCGGAAACCTTGTGTGCTGCATTTCAAGAACATGGAGAAATTGAGGAAGGGGCTGTTATCTATGATAAAGCAACAGGAAAATCCCGTGGTTATGGTTTCATCACTTACAAACATATGGAATCAACTCATCGTGCATTGAGAGCACCAAGCAAGTTAATTGATGGCAGGTTGGCTGTCTGTAATCTAGCTGCTGAGGGCCTAAGTGGAGCAAGTAATGCCCCTGATCTTTCCCTGAGGAAGCTGTACATTGGAAGCTTATCACCAGAAGTCAGTAGTGAAATGTTACTTAGCTTTTTTGGGAGGCATGGTGAAATAGAGGAAGGCTCAGTTGCATATGACAAGGATACAAATGAATCTCGTGGTTTTGGCTTCGTGACATACAAGACGGCAGAAGCTGCAAAGAAGGCCATAGATGATCCAGAAAAGGCTCTTGGGGGGAGGAATATAATTGTAAAATATGCGGATTCCCACAAGGGTAAAACAGGGCAGCCATCAGGGATTCCAATGACAACCTTACCAATGGCTCCTGGATATGTGCAGATGCAGCATGTCAAAACACATATTAGCAATCCCCAATTTGGCTACAATTACCCTCAGACCGTAGCATCATACCCTGCACATTCTTATCCAAGTCCTCCCACCGCACCTGCTCCTTATCCTACACAAGGCCAAGTTTCTTATCCTCCAGTTTCTGGCAAGTCAACTACGCCTGTTGGAATGAATAACTACCCATATTACTATCCTAAGGAATAA 2211 0.4428 MDINQAWNMGSCSQTLAGGGAQQQPPPPPPNQGGPAKSSATIMSRFESPASAFYATERCMGFQVQQYESQLGNPSLTSQFSKLNDLDFPLYQSDPSFESSNNTLQAMVMKSPLRSNQYSMKSPEKSNKFSYGSLPTTKFLPFQQHSLFINDSASVNMNSPYMGNQDHTVGLGSYNLHVDQMSFSSQQDNKLSPPLTSEASVPAVSGNQNSNGTTVSSKTRIRWNQNLHEKFVECVNRLGGAEKATPKAILKLMDSDGLTIFHVKSHLQKYRIAKYMPDSAQGKSDKRSNVEDAHHHLDTKTGLPLREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGRQLKMMFDQQQKTSDSLKNTQNLTSTANDNNSDRSNNHKVFELSTSEGSGNSFFHSKISEANLVERRGGTDAEMDDFKKRKLEEAGNGDASSKEELRFLLDPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKHMESTHRALRAPSKLIDGRLAVCNLAAEGLSGASNAPDLSLRKLYIGSLSPEVSSEMLLSFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTAEAAKKAIDDPEKALGGRNIIVKYADSHKGKTGQPSGIPMTTLPMAPGYVQMQHVKTHISNPQFGYNYPQTVASYPAHSYPSPPTAPAPYPTQGQVSYPPVSGKSTTPVGMNNYPYYYPKE 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0776 736 SUPERFAMILY Homeodomain-like 216 272 IPR009057 -
Lele08g0776 736 MobiDBLite consensus disorder prediction 693 720 - -
Lele08g0776 736 MobiDBLite consensus disorder prediction 183 218 - -
Lele08g0776 736 CDD RRM_RBM24_RBM38_like 474 549 - -
Lele08g0776 736 SUPERFAMILY RNA-binding domain, RBD 560 650 IPR035979 GO:0003676
Lele08g0776 736 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 565 642 IPR000504 GO:0003723
Lele08g0776 736 MobiDBLite consensus disorder prediction 278 301 - -
Lele08g0776 736 FunFam UBP1-associated protein 2C 552 650 - -
Lele08g0776 736 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 476 542 IPR000504 GO:0003723
Lele08g0776 736 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 567 635 IPR000504 GO:0003723
Lele08g0776 736 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 474 551 IPR000504 GO:0003723
Lele08g0776 736 FunFam Myb family transcription factor 217 275 - -
Lele08g0776 736 SUPERFAMILY RNA-binding domain, RBD 469 551 IPR035979 GO:0003676
Lele08g0776 736 Coils Coil 306 326 - -
Lele08g0776 736 MobiDBLite consensus disorder prediction 345 374 - -
Lele08g0776 736 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 278 545 - -
Lele08g0776 736 SMART rrm1_1 566 638 IPR000504 GO:0003723
Lele08g0776 736 SMART rrm1_1 475 547 IPR000504 GO:0003723
Lele08g0776 736 MobiDBLite consensus disorder prediction 280 301 - -
Lele08g0776 736 MobiDBLite consensus disorder prediction 695 709 - -
Lele08g0776 736 Gene3D - 466 553 IPR012677 -
Lele08g0776 736 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 218 273 IPR006447 GO:0003677
Lele08g0776 736 Pfam MYB-CC type transfactor, LHEQLE motif 304 350 IPR025756 -
Lele08g0776 736 Gene3D - 554 655 IPR012677 -
Lele08g0776 736 Gene3D - 217 276 - -
Lele08g0776 736 MobiDBLite consensus disorder prediction 12 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0776 Lele-ChrLele08 4839065 4847189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0776 212 357 G2-like Transcription Factor Family AT3G04450 53.333 7.94e-46 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele08g0776 RRM_1 5.1e-14 CL0221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0920 05 5656114 5658150 Lele08g0776 08 4839065 4847189 hybridization
Lele06g0781 06 4828158 4830241 Lele08g0776 08 4839065 4847189 hybridization