Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0761 ATGGATTCCAATTCCTTTCTCAATTATCAACACCAACGTCAGCCCAATTCTGGGTTGCTTCGCTATTGCTCTGCGCCGACTTCGGTTCTTGCAAATTTCACGCAGTCCCTTGGTTCTGGTCTCAGTAAGGGCAATAACCAGTGGGAGACTTCTGAATCCGAGAAGTTAATCTCTAGATTCGTAAATAACGACGACCTGGATTCGTCTAGTTTCCAGGAATTCGAAGCCAAGGGGCTTAGAGCACCAACCGAGGAAGCACTCAACCATATGAACTCCTATAATGGTTTGCCCCCTCACTACCCAAGGCAAAAGTCCACAGAGAGTTCTGCCATGGATAGTTCGTATGGACTGGTGGAATCATTGGGAATGGATCAAACGCAGCCGAAGAGCTTCAGGCCCAATCTTCTCAGGCAAAGCAGCTCCCCTGCCGGGCTTTTCTCCAACATTTCCTTTCCAAATGGGTATTCCACCGTTAAGGGTGTTGGAAACTATGGTGTGGCGAATAGCAGTAACGGTGAAGGGAGTCCATCCATGGGCAGATTGAAGGATCAGTTCGGCTTCTTATCAAGAAGTAATTCTTCCTTAGGGATTTTGTCACAGATATCGGAGATGGAGGGCGAGAGCATTGAAGCGACCAACCCTGACAATGGGGGCTTGGGATCTGTGAATGGTTATGGCCCTGGGTTTCCATACAGTTCCTGGAATGATGCGTCCCATGTCTCAGAAAATCTTGGTGGCTTGAAAAGAGAGCCAAGCGACAGTGAAAAATTATTTTCTAATGCTCAGTGCTTGTTCTTGACACGAATAAGTTGTGATAATCAGAATGGACCGCTCGGAAATCGGGTTCACATGTTATCTCATCACTTGAGTTTGCCAAAACCTTCAACAGATATGGGTGCCATGGAGAAGTTTCTTCAATTCCCAGATTCTGTTCCTTGTAAAATCAGAGCAAAGCGAGGTTGTGCAACCCATCCTCGAAGTATTGCAGAAAGGGTAAGAAGAACTCGGATAAGTGAACGAATGAGAAAACTTCAAGAGTTGGTCCCAAACATGGACAAGCAAACGAACACAGCAGACATGTTGGACTTGGCCGTCGAGTACATTAAAGATCTCCAAAAACAATTCAAGACTCTCAGTGAAAAAAGGGTAAACTGCAAATGTATGAGCACGCAGACGGCAGATACAAATCATGTCGTTTGA 1200 0.4583 MDSNSFLNYQHQRQPNSGLLRYCSAPTSVLANFTQSLGSGLSKGNNQWETSESEKLISRFVNNDDLDSSSFQEFEAKGLRAPTEEALNHMNSYNGLPPHYPRQKSTESSAMDSSYGLVESLGMDQTQPKSFRPNLLRQSSSPAGLFSNISFPNGYSTVKGVGNYGVANSSNGEGSPSMGRLKDQFGFLSRSNSSLGILSQISEMEGESIEATNPDNGGLGSVNGYGPGFPYSSWNDASHVSENLGGLKREPSDSEKLFSNAQCLFLTRISCDNQNGPLGNRVHMLSHHLSLPKPSTDMGAMEKFLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQFKTLSEKRVNCKCMSTQTADTNHVV 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0761 399 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 74 387 - -
Lele08g0761 399 FunFam Transcription factor bHLH130 family 322 391 - -
Lele08g0761 399 SMART finulus 327 377 IPR011598 GO:0046983
Lele08g0761 399 Pfam Helix-loop-helix DNA-binding domain 326 372 IPR011598 GO:0046983
Lele08g0761 399 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 321 371 IPR011598 GO:0046983
Lele08g0761 399 Gene3D - 322 395 IPR036638 GO:0046983
Lele08g0761 399 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 324 388 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0761 Lele-ChrLele08 4752306 4754321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0761 1 377 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 48.120 1.14e-94 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele08g0761 HLH 3.3e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0761 08 4752306 4754321 Lele08g0761 08 4752306 4754321 ECH
Lele05g0902 05 5571131 5573213 Lele08g0761 08 4752306 4754321 hybridization
Lele06g0762 06 4706427 4708506 Lele08g0761 08 4752306 4754321 hybridization