Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0752 ATGGAAACCGACAATGGTGATGCCAAGTCAAAGATGGAAGGCTATGAAGTAATAGAGCAACTTGGTAGAGGAACACTGGGCACCTCCTTTCTTGTTCTCAATAAGTCTGAGAAAAAGAAGTATGTGCTGAAGAAGATTCGCTTGGCTGAGCAAATCGACAAGTCTAAACGTACAGCGCTGCAAGAGATGAACCTGATTTCAAAACTAAATAGCCCATATATCGTGGAGTACAAAGATGCCTGGATGGAAAAGGAGGACTGCATGTGCATTATAGCTGGCTATTGTGAAGGAGCTAACATGGCTGAGATGATAAAGAGAGCCCGGGGATCTTTTTTCTCTGAGGAGAAAATCTGCAAATGGATGACTCAGTTATTGCTTGCTGTGGACTATCTGCATTCTAATCGTGTACTCCATGGAGATCTTAAGTGTTCCAACATATTCCTTTCCAAATTCAATGACATTCGACTTGGTGACTTTGGTCTTGCAAAACTACTTAAACCAGAAGACCTTGCTTCTTCGGGTGTGGGAACTCCAAACTACATGTGTCCTGAACTCCTTGAAAATATACCTTATGGTTATAAATCTGATATATGGTCGCTTGGTTGTTGCATGTTTGAAATTACTGCTCATCAACCTGCATTCCGTGCTCCGGACAAGGCTGGGCTTATCAATAAGATAAATAGATCCTCCATTTCTCCACTGCCAATTGTTTATTCGTCCACCCTGAAACAAATTATCAAGAGTATGCTGAGGAAGAATCCAGAACATAGACCAACAGCACTGGAATTGTTAAGGCATCCTCATTTACAACCATACGTCCTCCGCTGTCGGAATGCATCAGCTATCCTTCTTCCTATAAAATCCGAAAGTAGCCCAAATAGTAGCCCAAATAAGAAAACAAAAAGATCTTATAGGTCTGGTGATGGCAAAGACCATAGGGACAAACAAGTAGTGGGGTTAACTAATCGATTGGAGAGGGTTCATCTATTTGAGGCAAACGGTAATGCACATCCAAGCAGTGTTCCTAAGCGAACAGTTTCATCCAGTGTAGAAGACAACCTTGAGACCAAGATGGTTGATCCCACCAGCTACATTGTGGAATCATGTTCTAGTATTAGTGGCTCAAAAGCTGGCTCTACAACATCTGAATCTACTGTTAGTAGTGTGTTCAAGGAAGTAGACTTTAAAAGTAAACCTGCAAGTGAAACAATCGATAAGGAAGTATCAGAGACAATTCCAGAAGATTCTGAGCATGAAGAACTAGGATTGAATGCTGAAACTTTTCAAAAATCAGAAAGGGTTGACATGGATGCGGTGGCCACAAATGTAAAAGGTACTCTTTCCTATGATGGTTCCACTGAAGCCAAGGTACAGAGGGAAGGTACCATCCCTGAGGACTCCAAGAAACCAATAATGTCCTGTGCAGGCAGCTGTGATGAAGATGGATCCATTGAGGAAACGTTAAAACCATCACCACCTCCTATGCAGCCAGTTAGGGTTAGGGTCAAACAGGACTCCGAACCGGAAGGCCTTCGGTTGGACTGTTTGACTTCTGATAGTAACGATAAACTTGCAGGTAAAGCTGGAGGCCAAGCAAGAACACTTGAGGCCACTTGCTCCATGCAGAAAGAGAATGAAACTGTTAGTGAGGTTGATCAGATGCAGAGTGGGCTTTCGTTAAGCAAACCTACTGTGATCGGCGGTGATGAAACGAAGACTGTGCTGGAGAGGCCATGTGAGCAAAGAGCTGATGCTCTGGAGTCTCTGCTTGAGTTATGTGCTCGGTTACTTGAGCAGGACAAACTTGATGAGCTTGCTCGTGTGCTTGGACCATTTGGGCATGAAGCTGTCTCATCCAGAGAGACAGCAATATGGTTGACAAAGAGCCTCATATCTGCACAAAAAAAATTTAACACAGAAACCTAG 1926 0.4325 METDNGDAKSKMEGYEVIEQLGRGTLGTSFLVLNKSEKKKYVLKKIRLAEQIDKSKRTALQEMNLISKLNSPYIVEYKDAWMEKEDCMCIIAGYCEGANMAEMIKRARGSFFSEEKICKWMTQLLLAVDYLHSNRVLHGDLKCSNIFLSKFNDIRLGDFGLAKLLKPEDLASSGVGTPNYMCPELLENIPYGYKSDIWSLGCCMFEITAHQPAFRAPDKAGLINKINRSSISPLPIVYSSTLKQIIKSMLRKNPEHRPTALELLRHPHLQPYVLRCRNASAILLPIKSESSPNSSPNKKTKRSYRSGDGKDHRDKQVVGLTNRLERVHLFEANGNAHPSSVPKRTVSSSVEDNLETKMVDPTSYIVESCSSISGSKAGSTTSESTVSSVFKEVDFKSKPASETIDKEVSETIPEDSEHEELGLNAETFQKSERVDMDAVATNVKGTLSYDGSTEAKVQREGTIPEDSKKPIMSCAGSCDEDGSIEETLKPSPPPMQPVRVRVKQDSEPEGLRLDCLTSDSNDKLAGKAGGQARTLEATCSMQKENETVSEVDQMQSGLSLSKPTVIGGDETKTVLERPCEQRADALESLLELCARLLEQDKLDELARVLGPFGHEAVSSRETAIWLTKSLISAQKKFNTET 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0752 641 Gene3D Phosphorylase Kinase; domain 1 2 94 - -
Lele08g0752 641 MobiDBLite consensus disorder prediction 478 497 - -
Lele08g0752 641 MobiDBLite consensus disorder prediction 301 316 - -
Lele08g0752 641 SUPERFAMILY Protein kinase-like (PK-like) 12 306 IPR011009 -
Lele08g0752 641 CDD STKc_Nek 14 269 - -
Lele08g0752 641 MobiDBLite consensus disorder prediction 287 316 - -
Lele08g0752 641 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 12 590 - -
Lele08g0752 641 ProSiteProfiles Protein kinase domain profile. 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele08g0752 641 Gene3D Transferase(Phosphotransferase) domain 1 97 327 - -
Lele08g0752 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Lele08g0752 641 Pfam Protein kinase domain 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele08g0752 641 SMART serkin_6 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0752 Lele-ChrLele08 4699181 4703939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0752 21 270 MAP Kinase Kinase Kinase AT1G53570 32.549 2.91e-34 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lele08g0752 Pkinase 3.4e-64 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0752 08 4699181 4703939 Lele08g0752 08 4699181 4703939 ECH
Lele05g0895 05 5519534 5524394 Lele08g0752 08 4699181 4703939 hybridization
Lele06g0754 06 4654920 4666817 Lele08g0752 08 4699181 4703939 hybridization