Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0749 ATGGCTGACCCTTACTCTCATCTTTTCTCTTCCCCTCCTTTCTTCCAATTCAACGCTTCCCCTTCTTCTTCTAACCCTTCTTCTCACCACCACCACCATCCCTATGCCCTCCACAACTTCTTCAACCACCCAACCGTCTCCTCCTCCGGCGGCTTTTCCCACCACCACCACCACCATGCCGCTTCTTATTCTTCTATCCCTTCACCTCCGTCTCCTCCTCTCAGAGAAGCCCTTCCTCTCCTGAGCCTCAGCCCGTCGACGAAGCAAGAGCAAGATCGTAATCAAGACTTGGATGTCAAGGTCGACGACGGGATCATCTTCCACAGTGCTAAACCCAAAGAGGAAGAAGAAGACGAAGAGGAGGACGACGAGGCCACCGTCACTGTTGCCCTCCACATAGGGCTGCCCAGCCCTAGTGCTGCTGAGATTGATTCTGTGCTCTCCTCTTGCAACGATAGAGAACAAGTTGGAGGAGGAGATGTCGGCGGCTTTGACGGCGGTGGAGGTGGAGCTCATGAGGATTATTGTCCTGGGTCTGGTTTCATGCTCCACAATAAGCTGAACAAGGGACAGTACTGGATCCCTACTCCTTCACAGATTCTCATTGGTCCGACCCAGTTCTCTTGCCCTGTTTGCTTCAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGCCCAGAATCACTGAGAGGAACACAACCAACGGGAATGCTGAGGCTTCCATGTTATTGCTGCGCACCAGGTTGCAGAAACAACATCGATCACCCAAGAGCGAAGCCGCTGAAGGATTTTAGAACACTTCAAACGCATTACAAGAGGAAGCATGGGATCAAGCCCTTCATGTGCAGAAAATGTGGCAAGGCTTTTGCCGTGAGGGGCGACTGGAGAACTCACGAGAAGAACTGTGGCAAGCTCTGGTATTGTATCTGTGGCTCTGATTTCAAGCACAAGAGGTCTCTTAAGGATCACATCAAAGCCTTTGGGGTTGGCCATGCCGCTTATGGGATCGATGGGTTCGAAGAAGAAGACGACCCTGCGTCCGAAGTTGAGCAAGATAACGAGTCCACCCAGTAG 1107 0.5158 MADPYSHLFSSPPFFQFNASPSSSNPSSHHHHHPYALHNFFNHPTVSSSGGFSHHHHHHAASYSSIPSPPSPPLREALPLLSLSPSTKQEQDRNQDLDVKVDDGIIFHSAKPKEEEEDEEEDDEATVTVALHIGLPSPSAAEIDSVLSSCNDREQVGGGDVGGFDGGGGGAHEDYCPGSGFMLHNKLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGVGHAAYGIDGFEEEDDPASEVEQDNESTQ 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0749 368 SMART c2h2final6 207 229 IPR013087 -
Lele08g0749 368 SMART c2h2final6 291 311 IPR013087 -
Lele08g0749 368 PANTHER ZINC FINGER PROTEIN WIP2 48 365 IPR043584 GO:0003700|GO:0010468
Lele08g0749 368 Gene3D Classic Zinc Finger 206 229 - -
Lele08g0749 368 MobiDBLite consensus disorder prediction 84 103 - -
Lele08g0749 368 FunFam zinc finger protein WIP2-like 206 229 - -
Lele08g0749 368 Gene3D Classic Zinc Finger 269 343 - -
Lele08g0749 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 291 311 IPR013087 -
Lele08g0749 368 FunFam Zinc finger protein WIP2 260 342 - -
Lele08g0749 368 ProSitePatterns Zinc finger C2H2 type domain signature. 209 229 IPR013087 -
Lele08g0749 368 MobiDBLite consensus disorder prediction 47 78 - -
Lele08g0749 368 SUPERFAMILY beta-beta-alpha zinc fingers 273 311 IPR036236 -
Lele08g0749 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 207 234 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0749 Lele-ChrLele08 4679608 4681770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0749 1 368 C2H2 Transcription Factor Family AT3G57670 60.814 6.72e-146 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele08g0749 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0749 08 4679608 4681770 Lele08g0749 08 4679608 4681770 ECH
Lele05g0893 05 5501649 5503837 Lele08g0749 08 4679608 4681770 hybridization
Lele06g0750 06 4634629 4636786 Lele08g0749 08 4679608 4681770 hybridization