Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0744 ATGGATTCTTGCAGAAAGTCTCCATTAAAGCCATGGAAGAAAGGGCCAAGCAGGGGCAAAGGTGGCCCTCAGAATGCGATGTGCGAGTATCGAGGCGTTCGTCAGAGAACGTGGGGAAAATGGGTTGCTGAGATTAGAGAGCCAAAGAAGAGAACCAGGCTGTGGCTTGGTTCTTTTGCCACAGCTGAAGAAGCTGCCATGGCTTATGATGAAGCTGCAAGGAGACTCTATGGTCCAGATGCTTACCTTAATCTTCCCCACCTTCAACCCACCTCCAGCTCCACCATCAAATCTCAAAAGTTCAAATGGTTTCCTTCCAAGAATTTCATTTCAATGTTCCCTTCTTATGGATTGCTCAACGTTAATGCTCAACCTAGTGTTCATGTAATCCACCAGAAGCTGCAACAACTCAAGCAGAATGGGGTTCCCAGACACACTCCCTCTAGTTCATCCTGTGATCCAAAAGCTGAAGTTCAGATTATAGGAAGCAAACATAATGCAGACAATCCTCCAGACGAAAAAGAAGCTAAAACATCATCAGAAAGGATGTTTAGTGATATTCAGGACAAACCCCAGATTGACCTCCATGAGTTTCTTCAACAGATGGGAGTACTGAAGGATGAACAGACGGGAAGTTCCACAAAATCTGAAGCTTTATCAAATGATTTCAGTGATAATTTTGGAGAGTGTTCTGACAAGAGTTTCAATTGGGAGGAATTAATGGAGATGCATCCAGTTGTAGATAATCAGGGTTCAGAGGCAACCCAATTTCAAGCATATGACATAAATGAAGAGCTTACTTTCGCCACTTCGATTTGGAACTTCTAA 828 0.4348 MDSCRKSPLKPWKKGPSRGKGGPQNAMCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLQPTSSSTIKSQKFKWFPSKNFISMFPSYGLLNVNAQPSVHVIHQKLQQLKQNGVPRHTPSSSSCDPKAEVQIIGSKHNADNPPDEKEAKTSSERMFSDIQDKPQIDLHEFLQQMGVLKDEQTGSSTKSEALSNDFSDNFGECSDKSFNWEELMEMHPVVDNQGSEATQFQAYDINEELTFATSIWNF 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0744 275 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Lele08g0744 275 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Lele08g0744 275 MobiDBLite consensus disorder prediction 1 28 - -
Lele08g0744 275 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Lele08g0744 275 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 243 - -
Lele08g0744 275 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Lele08g0744 275 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Lele08g0744 275 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Lele08g0744 275 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Lele08g0744 275 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Lele08g0744 275 FunFam Ethylene-responsive transcription factor 2 28 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0744 Lele-ChrLele08 4632222 4633049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0744 5 275 AP2-EREBP Transcription Factor Family AT3G57600 53.047 1.62e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele08g0744 AP2 1.8e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1514 13 24418926 24421228 Lele08g0744 08 4632222 4633049 CCT
Lele14g1434 14 22784187 22786301 Lele08g0744 08 4632222 4633049 CCT
Lele15g0912 15 5313615 5315648 Lele08g0744 08 4632222 4633049 CCT
Lele16g0931 16 5282121 5284124 Lele08g0744 08 4632222 4633049 CCT
Lele08g0744 08 4632222 4633049 Lele08g0744 08 4632222 4633049 ECH
Lele05g0888 05 5461226 5462056 Lele08g0744 08 4632222 4633049 hybridization
Lele06g0744 06 4579842 4580672 Lele08g0744 08 4632222 4633049 hybridization