LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele08g0734	ATGCGACAAAAATGGGACCCTGCAAACGGTTCTGAATCAGATATATGCAGCAACAAACTATATAAGACCTGTTCTCAAGCTTGGTGGCATGGCGTAGAGCACGATGCCTTCTCTAAAGAGATGGAAGGGGAAGTCAAAATGAATTCTTTTGTGCCACAACATTTGGATGGTAGTTTTGGGAACCCAGCAAGTAATTCACAAGCTGTGATTTTTCTGGATGAAAGGAGGGAAGCTACCAAAGAGAAAGGTGGAGAAAAGTATGAAGGACATCAACAAAAGCAATTTGCTGTCCGTGCTTTGCATTCAACAGTAAATGAATTTCTTGCGCCACCTAGACAGTCAGATCTTGTTGGCCAGTCAACAGCATGTGCTTCTTACCCTTATCTAGATCCACATTATGGGGGAGCAATTCCTCCTTATGGACCTCAGCCTTTGTTACATCCTCCTAGTCTCGGAGTGCATTCTTCTAGGATGGTGTTACCACTGCAAATGGAAGAAGAACCTGTGTATGTTAATGCCAAGCAATACCATGGAATTTTGAGGCGTAGGCAATCACGAGCCAAGGCTGAGCTTGAAAAGAAGGTGATAAAAGTGAGGAAGCCATATCTTCATGAGTCTCGGCATTTGCATGCCTTGAGAAGAGCAAGAGGGTGTGGAGGTCGTTTTCTGACAACAAAGAAGGTCGATAGTACTGCTGCAAACACGGCAAACAAGAACCAGGATACTGTTAGTTCAGGCCACAAAGGCATATCTCCCAATTTATCTGCCATTCCTGATTCAGATTCTGGGTCCCGAGAAGTCTTGAAATCCCACCAATCAGGTATGCACTCCAGTTCTAGTGGCAACAATTATTACTCCCACGTTCAGGGATTTGAGCTTTCTGGTTATCAACCTCTCTCAAGTGATAGAAGAAACCAAAGGGATTTCTCTGGGGCTCGCAGGGCTCTGACCATTAAATAA	960	0.4437	MRQKWDPANGSESDICSNKLYKTCSQAWWHGVEHDAFSKEMEGEVKMNSFVPQHLDGSFGNPASNSQAVIFLDERREATKEKGGEKYEGHQQKQFAVRALHSTVNEFLAPPRQSDLVGQSTACASYPYLDPHYGGAIPPYGPQPLLHPPSLGVHSSRMVLPLQMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKVRKPYLHESRHLHALRRARGCGGRFLTTKKVDSTAANTANKNQDTVSSGHKGISPNLSAIPDSDSGSREVLKSHQSGMHSSSSGNNYYSHVQGFELSGYQPLSSDRRNQRDFSGARRALTIK	319

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele08g0734	319	Gene3D	-	165	226	-	-
	Lele08g0734	319	ProSiteProfiles	NF-YA/HAP2 family profile.	165	225	IPR001289	GO:0003700\|GO:0006355
	Lele08g0734	319	MobiDBLite	consensus disorder prediction	233	283	-	-
	Lele08g0734	319	PRINTS	CCAAT-binding transcription factor subunit B signature	168	190	IPR001289	GO:0003700\|GO:0006355
	Lele08g0734	319	PRINTS	CCAAT-binding transcription factor subunit B signature	199	222	IPR001289	GO:0003700\|GO:0006355
	Lele08g0734	319	Pfam	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	167	222	IPR001289	GO:0003700\|GO:0006355
	Lele08g0734	319	ProSitePatterns	NF-YA/HAP2 subunit signature.	170	190	IPR018362	GO:0003677\|GO:0016602
	Lele08g0734	319	SMART	cbf3	164	225	IPR001289	GO:0003700\|GO:0006355
	Lele08g0734	319	MobiDBLite	consensus disorder prediction	296	319	-	-
	Lele08g0734	319	PANTHER	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	70	286	IPR001289	GO:0003700\|GO:0006355
	Lele08g0734	319	MobiDBLite	consensus disorder prediction	233	260	-	-
	Lele08g0734	319	MobiDBLite	consensus disorder prediction	267	283	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele08g0734	Lele-ChrLele08	4559661	4562870	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele08g0734	95	230	CCAAT-HAP2 Transcription Factor Family	AT5G12840	55.147	8.60e-44	149

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YA	Lele08g0734		CBFB_NFYA	5.6e-26	No_clan