Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0724 ATGGATATTTACCGTTTTTCGAATACGAAACCTTTATTACGTGAGATTTGTCTGAGTAATGATTCGTCTTTTGTTCACGATGGGAAAATCGGGGTATCAAAATTCACCTTTCCTTTTTATTATTGCCGGACTTTATCTCTAAATTCTCGGCCAAGTCTTCTTCTTGGTCTTTCTTGCGTGGCAGCTGATTTTGATCCTCCAATGGGTACTCCCGAATTCCCAGATCTTGGAAAGCATTGCGCTGTTGATGATTGCAAGTTGATTGATTTCTTGCCCTTCACATGCGATCGTTGCAATCAGGTATTTTGTTTGGAGCACAGAGGTTATATTAAACATCATTGTCAGAAAGCGGACAAACAAGATGTCGCTGTTGTCATATGTCCACTTTGTGCAAAAGGAGTCCGCCTAATTCCTGATCAAGATCCAAACATAACTTGGGAGAATCATGTCAACACTGAGTGTGACCCATCAAATTATGAGAGAGCCATGAAGAAGAAAAAATGCCCCGCCCCTGGATGCAGAGAGGTCTTGGTGTTTTCAAACACAATCAAATGCAGGGATTGCTTGATAGATCATTGTCTAAAGCATCGTTTTGGCCCTGATCACAAGTGTCCTGGACCCAAAAGTTTGGAAACAAGCTTTACATTTATGAATCTCTTAAGCAGAAGTAGAAAAGAAGAGTCAAAGCCAAATCCATCTCCACCAACATCCTCATCAAAATGGGCTTCAGGCTTTCGCAGTGTGGCGTCAAATCTCCGAGCTTCAGCCGAAGCCAGCATGTCAAAATTGGGTAATGAAATTAACCAAGCTTGGCTAACAGCAAAGGATGGGATGGGACAGAGCAGTGGGAGGGGTAATGAAAATGGGCAAGTGGAGATGGAGCAATGTCCTCAGTGTAATGCAAAGTTTTCCTCTGTCACTTCTTTGGTGGATCATGTGCAGAAAGTGCATGAAAGTAGCAGCAACCGATCCAGGGGGGTGGCTAAGGTGACCATCGATGCCTGTCCCAAGTGTGGTAGAGGATTTCGAGATCCAGTTGCTCTTGTGGAGCATGTTGAGAGGGATCACGGTGGTAGTTCAAGAGCCTAG 1089 0.4399 MDIYRFSNTKPLLREICLSNDSSFVHDGKIGVSKFTFPFYYCRTLSLNSRPSLLLGLSCVAADFDPPMGTPEFPDLGKHCAVDDCKLIDFLPFTCDRCNQVFCLEHRGYIKHHCQKADKQDVAVVICPLCAKGVRLIPDQDPNITWENHVNTECDPSNYERAMKKKKCPAPGCREVLVFSNTIKCRDCLIDHCLKHRFGPDHKCPGPKSLETSFTFMNLLSRSRKEESKPNPSPPTSSSKWASGFRSVASNLRASAEASMSKLGNEINQAWLTAKDGMGQSSGRGNENGQVEMEQCPQCNAKFSSVTSLVDHVQKVHESSSNRSRGVAKVTIDACPKCGRGFRDPVALVEHVERDHGGSSRA 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0724 362 SUPERFAMILY AN1-like Zinc finger 160 209 IPR035896 -
Lele08g0724 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 294 322 IPR013087 -
Lele08g0724 362 ProSitePatterns Zinc finger C2H2 type domain signature. 296 317 IPR013087 -
Lele08g0724 362 Pfam AN1-like Zinc finger 168 207 IPR000058 GO:0008270
Lele08g0724 362 Pfam AN1-like Zinc finger 80 119 IPR000058 GO:0008270
Lele08g0724 362 ProSitePatterns Zinc finger C2H2 type domain signature. 335 356 IPR013087 -
Lele08g0724 362 SMART c2h2final6 294 317 IPR013087 -
Lele08g0724 362 SMART c2h2final6 333 356 IPR013087 -
Lele08g0724 362 ProSiteProfiles Zinc finger AN1-type profile. 162 212 IPR000058 GO:0008270
Lele08g0724 362 SUPERFAMILY AN1-like Zinc finger 66 126 IPR035896 -
Lele08g0724 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 333 361 IPR013087 -
Lele08g0724 362 Pfam C2H2-type zinc finger 295 317 - -
Lele08g0724 362 Gene3D Classic Zinc Finger 260 359 - -
Lele08g0724 362 MobiDBLite consensus disorder prediction 222 243 - -
Lele08g0724 362 Gene3D - 68 126 IPR035896 -
Lele08g0724 362 SMART AN1_Zf_4 168 209 IPR000058 GO:0008270
Lele08g0724 362 SMART AN1_Zf_4 80 119 IPR000058 GO:0008270
Lele08g0724 362 Gene3D - 147 217 IPR035896 -
Lele08g0724 362 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 72 324 - -
Lele08g0724 362 ProSiteProfiles Zinc finger AN1-type profile. 74 122 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0724 Lele-ChrLele08 4495288 4499799 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0724 68 362 C2H2 Transcription Factor Family AT2G41835 62.876 3.81e-122 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele08g0724 zf-AN1 3e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0724 08 4495288 4499799 Lele08g0724 08 4495288 4499799 ECH
Lele05g0869 05 5332273 5340458 Lele08g0724 08 4495288 4499799 hybridization
Lele06g0723 06 4445897 4452550 Lele08g0724 08 4495288 4499799 hybridization