Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0696 ATGGATCACAGAAAGCAATCCAAGGACTCGCTCTCCTACTCTAGTATTTTCAATCTCGAGTCTTTGATGAATTTTCAACTTCCACAACAAGATGATGATTTTGATTATTATGGGAATAGTAGTCAGGATGAGAGCAGAGATAGCCAAGGTAGGGCAATCGCAAATCACAGCAATGGGAGTAAGGTAAATTTGCTGAAGAAGAGGAAGTGGTCTCAAAACAGTGACGACGAAGACAAGGGTAATTTTTGTGCAACGCACATGACTGAGGAGCGATACCGATCAATGCTTGGGGAACATATTCAAAAATACAAGAGGAGGTATAAAGATACCTCATCTAGTCCTGCCCAAAATCGTGTTAGTGCTCAACTTCTTAAAAGTAACACAGGTTTGAAAGCGCGGAAGTTAGTGAATGAGCACCGAGGAGGAACACATGCTCTGGAGACTACACCTGAGTGGCCTAATGATATTAATCCCCAGAAACCTGTAAACTACCGTGACGCAGGATTCAGACAGCAATATGGACCTGATAGAACTATCTACGAACCGGCTTCTTTAGATATTGGAGATGGTGTTACTTACAAAATTCCTCCTACTTATGATAAGTTAGCAGCAATGCTGAACCTTCCAAGTTTCTCAGATATCCGAGCTGAGGAGTTTTACTTAAAAGGCACCTTGGATTTGGGATCCTTGGCTGCAATGATGGCTTCTGATAAGAGGGGTGGGACTAGAAACCTAGCAGGCATGGGGGAAACCTTACTTCAATATGATTCACTTCAGGCACGATTGAAGGCCATGTCAGCTTCTAATTCACCTCATCAATTTAGTCTGAAAGTATTTGATATTGGTTTGAATTCTTCCATCCCAGAGGGAGCTGCTGGAAATATTAAGCGATCTATTTTGTCTGAGGGTGGTGTATTGCAGGTTTATTATGTCAAGGTTTTAGAGAAAGGTGACACATATGAGATCATTGAAAGAAGCCTACATAAGAAGCAAAAGGTAAAGAAAGACCCTTCTTTGATTGAGAAGGAGGAAATGGAAAGAATTGGTAGAGTCTGGGTAAATATTGTAAGAAGAGACATACCAAAGCATCATAGGTTTTTTACTGGTTTCCATCGAAAGCAACTTGTTGATGCCAAGAGGTTCTCAGAGAACTGTCAAAGAGAGGTCAGAATGAAAGTGAGTAGATCACTTAAATTCATGAAGAGTGCACCCATCCGCACCCGAAAACTAGCTAGAGATGTCTTGCTGTTCTGGAAACGAGCAGATAAGGAGATGGCAGAATTGAGGAAAAAAGAGGAGAAAGAAGCTGCTGAAGCTTTGAGGCGTGAACAGGAGCTTCGAGAAGCAAAGAGGCAGCAGCAAAGGCTGAATTTCCTTATACAGCAAACTGAGCTATACAGTCACTTTATGCAGAACAAGTTGAACTTACTGCCCTCTGATGCTTTACCTACAGTAGATGAAAAAGCAGATGATCAAGATGCAGAACTTGGCTCTTCAGATGCTGGGCCTAGTGAGGAGGAAGATCCTGAAGAGGCTGAACTGAAGAAGGAAGCTATGAAGGCTGCTCAAGAAGCTGTCTCTAAGCAGAGAAAGTTGACGAGTGCTTTTGATAATGAATGCTTGAGGCTGCGTCAGGCTGGTGAAACTGATGCACTTTCACAGGAAGTTGCAGGAGCAAGTAACATTGATTTGCAAACCCCCTCAACCATGCCTGTGGCATCAACAGTTCGGACACCGGAAATGTTTAGAGGCTCTCTTAAAGAATATCAGCTAAAAGGTCTTCAGTGGTTAGTTAATTGTTATGAGCAGGGTCTGAATGGTATACTTGCTGATGAAATGGGACTTGGAAAGACCATTCAAGCCATGGCTTTTTTAGCCCATTTAGCTGAGGAGAAAAATATATGGGGACCATTTTTGGTTGTTGCACCTGCATCAGTATTGAACAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGAAATGAAAGCTCTTCCTTATTGGGGTGGGCTTCATGAGCGGACAGTACTTAGGAAAAGTATTAACCCAAAGGATCTTTATCGTAGGGAAGCGAAATTTCACATTCTCATTACAAGCTACCAGCTACTAGTATCAGATGAGAAGTTTTTTCGGCGTGTGAAATGGCAGTACATGGTATTGGATGAAGCCCAGGCAATTAAAAGTGCAAACAGTATAAGATGGAAGACACTCCTCAGTTTTAATTGTCGGAATCGCCTGCTGCTGACTGGTACACCAATTCAAAATAATATGGCAGAATTGTGGGCTCTTCTGCACTTCATTATGCCAACTTTATTCGATAGCCATGAACAGTTTAATGAATGGTTTTCAAAAGGAATTGAGAACCATGCAGAACATGGAGGTACTTTGAATGAACATCAACTTAACAGATTGCATTCTATTCTAAAGCCTTTCATGCTGCGGCGAGTTAAAAAAGATGTAGTATCCGAACTGACTAAGAAAATAGAGGTTACAGTGCACTGCAAGTTGAGTTCTCGGCAGCAAGCTTTCTATCAAGCAATCAAGAATAAAATATCTCTTGCTGAGTTGTTTGATAGTAATCGTGGGCAGCTCAATGATAAGAGAATTCTGAATTTAATGAATATTGTTATTCAACTAAGAAAGGTTTGCAACCATCCAGAGTTGTTTGAGAGGAGTGAGGGAACCACATTCTATAATTTTGCAGAGATTCCAAATTCCCTTCTGCCTCCTCCATTTGGGGAGTTGGAGGATGTATACTATTCTGGGGGTCACAATCCAATATCATACAAGGTGCCAAAACTTGTCCATCAAGAAATCATGCAAGGTTCTAAATTGCTCAATTCAACAATTGCTTGTGGTGTTAGCAGAGAATTTTTTCAAAGACATTTTAATATTTATAGCCCAGAGAATGTTTTTCAATCTATCTTCTCTGAAGGGAATAAATCAAATGCGTCATTTATTAAAAGTGGAACTTTTGGCTTTACCCATTTGATGGATTTGTCCCCGCAAGAAGTGACGTTTTCAGCTACTGGTTCTTTTATGGAGCAAGTACTGTATTCTATGGTGAGATGGGAACAGAAATTTATCAATGAAGTTGTGGACTTCGTAATAGAGACTATAGATAATGATCCTGAATACAGTTACCTTGAAAGAGGAAAAGTGAGGGCTGTCACACGAATGTTATTGGTGTCAACAAAGTCTGAGACAAAGATTTTTCAAAGAAGATTTGCTACTGGCCCCAGTCGTACCCCTTTTGAGGCATTAGTTGTCCCTTATCAAGATAGGATTATATCCAATGCAAGACTTATTCACTCAGCATACACATATATCCCTCGGACTAGAGCTCCCCCAATTGTTGCCCACTGCTCAGACCGAAGCTTCTCTTATAAAACACTTGAAGAGTTGCATGACCCGTGGGCTAAGAGATTGCTTGTGGGATTTGCACGTACATCTGAGTTTACTGGACCTAGAAAGCCCGATGGTCCTCCCCATCATTTAATTCAAGAGATTGATTCTGACCTAGAAAGCCAGCCTGCTCTTCAGTTAACCTACAAAATTGTAGGTTCGTCTCCCCCTATGCAAAATTTTGACCCAGCAAAATTGCTCACTGACTCTGGGAAGCTCCAAACACTTGACATATTATTAAAACGCTTGCGGGCTGAAAATCATCGTGTTCTCTTGTTTGCTCAGATGACTAAGATGCTGAATATTCTTGAGGACTACATGAACTATAGAAAATATAGATATTTTAGACTTGATGGATCATCATCTATTCAGGACCGCAGAGACATGGTTAGAGACTTCCAGCAGAGGAATGATATTTTTGTGTTCTTACTTAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACGGCTGCTGACACAGTAATCTTTTATGAGAATGATTGGAATCCCACATTGGATCAGCAGGCAATGGATAGAGCTCATCGATTGGGTCAAACAAAAGATGTCACTGTGTACAGACTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCTTAGAGCAAGTCAAAAAAGCACTGTACAGAACCTTGTCATGACTGGTGGTGGTTCTGGTGATGATATTTTAGCTCCTGAGGATGTTGTATCTTTGCTTCTGGATGATGTGCAGTTGGAGCAGAAATTCAAGGAAATTCCTCTTCAGGTAAAGGATAAGCAAAAGAGGAAACAAACTGTGAAGGGTATACGGGTAAATGAAGATGGTGATGCGTCTCTGGAAGATCTAACAAACTCTGGAGCGCAGGGCCCAGATAATGATATTTCTTTTGACCCAGAGGGATCAAAGCCCAGTAATAAAAAGAGAAAAGCTGCCTCTGAGAAGCAAATGGCATCAAGGGCAAGGAATTTTCAAAAGACGAATGAGTTGATGGACTATGAGTTGTATGATGCTACTCAAAATGCTGATCCAGCGGTCCAGAAACCCAAGAGACCAAAGAAGGCAAGGAAAGTTGGGAATGACAAGTTTAACGGCTCTTTTACTGGTACAGTCAATATATTCCCAGAGCAGACCCAATAG 4536 0.4118 MDHRKQSKDSLSYSSIFNLESLMNFQLPQQDDDFDYYGNSSQDESRDSQGRAIANHSNGSKVNLLKKRKWSQNSDDEDKGNFCATHMTEERYRSMLGEHIQKYKRRYKDTSSSPAQNRVSAQLLKSNTGLKARKLVNEHRGGTHALETTPEWPNDINPQKPVNYRDAGFRQQYGPDRTIYEPASLDIGDGVTYKIPPTYDKLAAMLNLPSFSDIRAEEFYLKGTLDLGSLAAMMASDKRGGTRNLAGMGETLLQYDSLQARLKAMSASNSPHQFSLKVFDIGLNSSIPEGAAGNIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLHKKQKVKKDPSLIEKEEMERIGRVWVNIVRRDIPKHHRFFTGFHRKQLVDAKRFSENCQREVRMKVSRSLKFMKSAPIRTRKLARDVLLFWKRADKEMAELRKKEEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKLNLLPSDALPTVDEKADDQDAELGSSDAGPSEEEDPEEAELKKEAMKAAQEAVSKQRKLTSAFDNECLRLRQAGETDALSQEVAGASNIDLQTPSTMPVASTVRTPEMFRGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPEMKALPYWGGLHERTVLRKSINPKDLYRREAKFHILITSYQLLVSDEKFFRRVKWQYMVLDEAQAIKSANSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVVSELTKKIEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNDKRILNLMNIVIQLRKVCNHPELFERSEGTTFYNFAEIPNSLLPPPFGELEDVYYSGGHNPISYKVPKLVHQEIMQGSKLLNSTIACGVSREFFQRHFNIYSPENVFQSIFSEGNKSNASFIKSGTFGFTHLMDLSPQEVTFSATGSFMEQVLYSMVRWEQKFINEVVDFVIETIDNDPEYSYLERGKVRAVTRMLLVSTKSETKIFQRRFATGPSRTPFEALVVPYQDRIISNARLIHSAYTYIPRTRAPPIVAHCSDRSFSYKTLEELHDPWAKRLLVGFARTSEFTGPRKPDGPPHHLIQEIDSDLESQPALQLTYKIVGSSPPMQNFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSSIQDRRDMVRDFQQRNDIFVFLLSTRAGGLGINLTAADTVIFYENDWNPTLDQQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGGSGDDILAPEDVVSLLLDDVQLEQKFKEIPLQVKDKQKRKQTVKGIRVNEDGDASLEDLTNSGAQGPDNDISFDPEGSKPSNKKRKAASEKQMASRARNFQKTNELMDYELYDATQNADPAVQKPKRPKKARKVGNDKFNGSFTGTVNIFPEQTQ 1511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0696 1511 SMART ultradead3 582 777 IPR014001 -
Lele08g0696 1511 Coils Coil 423 462 - -
Lele08g0696 1511 Gene3D - 1175 1417 IPR027417 -
Lele08g0696 1511 MobiDBLite consensus disorder prediction 33 67 - -
Lele08g0696 1511 MobiDBLite consensus disorder prediction 487 518 - -
Lele08g0696 1511 ProSiteProfiles DBINO domain profile. 351 476 IPR020838 GO:0003677
Lele08g0696 1511 FunFam DNA helicase INO80-like protein 1177 1428 - -
Lele08g0696 1511 MobiDBLite consensus disorder prediction 1393 1456 - -
Lele08g0696 1511 CDD SF2_C_SNF 1197 1329 - -
Lele08g0696 1511 SMART helicmild6 1235 1318 IPR001650 -
Lele08g0696 1511 MobiDBLite consensus disorder prediction 33 81 - -
Lele08g0696 1511 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 816 1377 IPR027417 -
Lele08g0696 1511 MobiDBLite consensus disorder prediction 1473 1511 - -
Lele08g0696 1511 Pfam Helicase conserved C-terminal domain 1209 1318 IPR001650 -
Lele08g0696 1511 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1209 1393 IPR001650 -
Lele08g0696 1511 FunFam Putative DNA helicase INO80 558 836 - -
Lele08g0696 1511 MobiDBLite consensus disorder prediction 1393 1410 - -
Lele08g0696 1511 MobiDBLite consensus disorder prediction 1495 1511 - -
Lele08g0696 1511 Pfam SNF2-related domain 601 888 IPR000330 GO:0005524|GO:0140658
Lele08g0696 1511 Coils Coil 511 531 - -
Lele08g0696 1511 Pfam DNA-binding domain 346 475 IPR020838 GO:0003677
Lele08g0696 1511 PANTHER HELICASE SRCAP-RELATED 84 525 - -
Lele08g0696 1511 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 598 769 IPR014001 -
Lele08g0696 1511 Gene3D - 559 838 IPR038718 -
Lele08g0696 1511 MobiDBLite consensus disorder prediction 1433 1448 - -
Lele08g0696 1511 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 570 814 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0696 Lele-ChrLele08 4276390 4286796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0696 607 888 RAD5 or RAD16-like Gene Family AT5G43530 29.052 4.33e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele08g0696 SNF2_N 6.8e-67 CL0023