Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0683 ATGATAGTACACAAAACGGAAACTATGGCGCCAAAAACATTACCTTCGTCTCCAATCCCTATTGGTAACTGCGAGATTATCGTTGAGGCCAAAAGTTTCACCTGTAAGTCGGATTCAAACAGCCTCCAAATTTCTCTTCCAACAAGAGGGAAGATTAAAGTATCAGTTGTGAAAGGCGAAGTTACGAATGAAGGAAATGATTCTGAGAATTTTAAGATCGAAGATAGAGATCATACATTCGTCCTTGTTAATCCTAAAGATGCTGACGGCACTAACAAATCCTACCTGCAGGAAGTATTGCAGATGTATATGACAGAACTCCCAGGAATGAATTATGCTGCGAATACTGGAAAGCAATCAAATTTTCTTGAAAGATGCGTAACTAATGGGAAATATCGTACACTGCTTCTGAAATCTGATTCTGTTGGAAATTCTGGAAAGGTTATAGCTGCCATTACATATCAAATAGTGCCTGCAGATACAGAGTATGCAGAGATCCCACTTGCAGCCGTTAGTGCAATATATCAACGCAAGGGTCTTGGTCATATGTTGTTTGTAGAACTACGGAAGAGACTTCAACATGTTGGTATTCGTTCAATTTTCTGCTGGGGAGACAAAGAATCTGAAGGGTTTTGGCTTAAACAGGGTTTTATATCAATAGCAGAGGTGGACACCAAAGGTAGAGCTCGCAGGTTACCTATAAAAGCTGATATTCGTAAAGCATTATGCTTTCCTGGTGGTTCTACTCTCATGGTTTGCCATCTAAGGACAGAATTTTCAGCTGATGCTACCAACTCTATGAAGCGTCTTCCCTCACAACATCGGAATCACTTAACATTTGGAAATGCTGAGAACGACCGGCTTAAATTTACAGGCCAGTTACTCATTGATTTGAACTTTTCAAATAACTCTACTGATAGAACAGATAATACAGAGACTAGTCATCTTAAGGCTCTGGTGAATGATGGCTTTTCAAGAGGATTTGATAAATTGAGCGATGGTGACACACTGCCCACTGTTGCAGGACTTGCAAATGATGGAGTTGATGCTGAAATGAAGGATTGTTCTAATTCCTCAAAAGGTCCAAAGAGGACCTGGGAAGCCTCTTTGTCATCATTAAAGTCAAAAAGAGTGAAAGGAAGCCATATAGTTGATGGTGGATCTGAGTCTAGCTGGGGTTTTGTCTCAGAGGTCGATAGGACTAATTCTTGTTTTGTGGGATGCTCATGGGGCGTTTCAATTGGAAAAAGTTCAGTGGAGCTTCCATGTAGTGATTCTTTGATTGTCCAAGAAAAGAATTCTGAGAAACTCAAAGGGGATTATTTACCTTTAGAAGCTCAAGTCAACAATGAACAGCTGTCAACTAAACAATGCTTTAGAATCATGCTGATGAATATTGCTGATGATGATAAGAAAACGCACCTTACAAAGGTAATTGAAGCCCTTGGTGGCACTGTTACATCTGAAGGAAGCATGACCACACATGTTGTCACAGGAAAAGTAAGGAAAACTTTGAATTTCTGCACTGCCCTCTGCTCAGGGGCTTGGGTGGTCTCATCAGATTGGTTAAAAGAAAGCTATCGTGTAGGCAAATTTGTTGATGAGTTGGCTTACATATTAAATGACAAGGATTATCTATTGAAGTACAGATCTGATTTAAAAAGTGCAGTTTTCCGAGCGAAAGCCAACCCCCGAGCTTTGTTCAAGGGGTACAGTATGTGTATTGCAGATCATGTTCAACCTCCTGCTAAAACGCTATCTTCAATTGTGAGCTCTGCTGGTGGCAACGTTATTTGTGGGTTGAAGAAAGTAAATGAAGCATCCTCAACCATTTTTGTGACATGTGAAGAAGATATGGAAGAAGCAATGGTAGCTGCAAAGATGGGGATCCGAACTTTCAGTAGTGAGTGGTTTATGAACTGTGTCATGAGGCAGGAACTTGACATGGAGGCCTTTCAATTTGCAGAGTCCTTGTGA 1977 0.4062 MIVHKTETMAPKTLPSSPIPIGNCEIIVEAKSFTCKSDSNSLQISLPTRGKIKVSVVKGEVTNEGNDSENFKIEDRDHTFVLVNPKDADGTNKSYLQEVLQMYMTELPGMNYAANTGKQSNFLERCVTNGKYRTLLLKSDSVGNSGKVIAAITYQIVPADTEYAEIPLAAVSAIYQRKGLGHMLFVELRKRLQHVGIRSIFCWGDKESEGFWLKQGFISIAEVDTKGRARRLPIKADIRKALCFPGGSTLMVCHLRTEFSADATNSMKRLPSQHRNHLTFGNAENDRLKFTGQLLIDLNFSNNSTDRTDNTETSHLKALVNDGFSRGFDKLSDGDTLPTVAGLANDGVDAEMKDCSNSSKGPKRTWEASLSSLKSKRVKGSHIVDGGSESSWGFVSEVDRTNSCFVGCSWGVSIGKSSVELPCSDSLIVQEKNSEKLKGDYLPLEAQVNNEQLSTKQCFRIMLMNIADDDKKTHLTKVIEALGGTVTSEGSMTTHVVTGKVRKTLNFCTALCSGAWVVSSDWLKESYRVGKFVDELAYILNDKDYLLKYRSDLKSAVFRAKANPRALFKGYSMCIADHVQPPAKTLSSIVSSAGGNVICGLKKVNEASSTIFVTCEEDMEEAMVAAKMGIRTFSSEWFMNCVMRQELDMEAFQFAESL 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0683 658 CDD NAT_SF 144 203 - -
Lele08g0683 658 SUPERFAMILY BRCT domain 460 542 IPR036420 -
Lele08g0683 658 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 79 240 - -
Lele08g0683 658 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 107 224 IPR016181 -
Lele08g0683 658 Gene3D BRCT domain 445 564 IPR036420 -
Lele08g0683 658 Gene3D - 78 233 - -
Lele08g0683 658 ProSiteProfiles BRCT domain profile. 461 540 IPR001357 -
Lele08g0683 658 CDD BRCT_PAXIP1_rpt6_like 567 648 - -
Lele08g0683 658 SUPERFAMILY BRCT domain 559 647 IPR036420 -
Lele08g0683 658 Pfam Acetyltransferase (GNAT) family 140 217 IPR000182 GO:0016747
Lele08g0683 658 ProSiteProfiles BRCT domain profile. 563 647 IPR001357 -
Lele08g0683 658 Pfam BRCA1 C Terminus (BRCT) domain 468 526 IPR001357 -
Lele08g0683 658 SMART BRCT_7 453 530 IPR001357 -
Lele08g0683 658 SMART BRCT_7 565 645 IPR001357 -
Lele08g0683 658 Gene3D BRCT domain 565 657 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0683 Lele-ChrLele08 4209442 4214672 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Lele08g0683 Acetyltransf_1 2.7e-05 CL0257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0683 08 4209442 4214672 Lele08g0683 08 4209442 4214672 ECH
Lele05g0836 05 5097045 5102924 Lele08g0683 08 4209442 4214672 hybridization
Lele06g0686 06 4181419 4186354 Lele08g0683 08 4209442 4214672 hybridization