Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0652 ATGTCTTCGGATGAATCTCTACGATCTCTATCCATGGACTATCTCAACCTGCTCATCAATGGTCAAGCCTTCAGTGACGTCACTTTCAGCGTGGAGGGTCGTCTGGTTCACGCGCACCGTTGCATCCTGGCGGCTCGTAGCCTCTTCTTCAGGAAATTCTTCTGCGGCTCATCAGACACACCGTCCGGCGGGCTGGAGGCGTCAGGCTCTCGTGTCAACTCAGCCACGTCTCCGACGAGACCCGGGGTCATTTCGGTGGACGCGGTGGGCTATGAAGTGTTTCTGCTTCTGCTTCAGTTTTTGTACAGTGGCCAAGTCTCTATTGTGCCCCAGAAGCACGAGCCGAGGCCTAATTGCGGCGAAAGGGGCTGCTGGCACACGCATTGCACCTCCGCCGTTGATCTCGCCCTTGATACTCTCGCTGCCGCCAGATCTTTTGGCGTCGAGCAGCTCGCATTGCTCACTCAGAAACAATTAGCCAGCATGGTAGAGAAGTCTTCCATTGAAGATGTGATGAAGGTGCTTCTAGCTTCAAGAAAGCAAGACATGAACCAACTTTGGAGTACTTGTTCACACCTCGTTTCCAAGTCCGGTCTCCCTCCTGAAGTCCTCGCCAAACACCTTCCCATCGACGTCGTCGCTAAAATCGAAGAGCTTCGTCTCAAAACCTCCCTCGTTCGTCGCCCCCTAATCCCCCACCACCACCCCCACCCCCACCACCATCACGACCATATCAGCGCCACGGCAGATCTCGAGGACCAGAAAATCCGCAGAATGAGAAGGGCACTTGACTCCTCCGATGTTGAACTCGTCAAGCTCATGGTCATGGGAGAAGGCTTAAATCTAGACGAAGCATTGGCCTTGCACTACGCCGTAGAGAATTGCAGCCGTGAAGTCGTTAAGGCCTTGCTGGAGCTCGGTGCAGCCGATGTCAACTATCCCGCGGGACCCGTCGCCAAGACCCCACTTCACCTCGCCGCCGAGATGGTGTCACCGGACATGGTGGCGGTCCTCTTGGACCACCACGCCGACCCGAACGTCCGGACCGTGGATGGGGTAACCCCTCTTGACATCCTGAGAACCCTGACTTCTGATTTTCTGTTCAAAGGAGCCGTCCCTGGGCTCGCCCATATTGAACCGAACAAATTGAGGTTGTGTTTGGAGCTGGTTCAATCGGCAGCTCTTGTGCTGTCACGCGAGGAAGGCAATGCGAATCCTCCTTCTTCAACGACGATTTATCCGCCGATGAACGAAGACCATAATAGCTGTAGTAGCAACAGCCATATCACGAACCTTAATCTGGACGCAAGGCTGGTTTACCTGAATCTGGGTGCGACGTCGTCGTCGGGACAAATAGGTTCGAGATTGGACGGCGACGAAGATAGCAGCCACAATAGCCAGAACCGTCATGGTTCCCAAGGTGGATCATGTGACCCAACAACAATGCATTTGAAGGGTCAGCATATGAAGTGGAGTTTCATAGGATCAGATAATGGGATAAGAGTAGTCAGAGAAGACAAGGAGAATCTAAGAGACAAAGGGTGGGCATGA 1551 0.5377 MSSDESLRSLSMDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGSSDTPSGGLEASGSRVNSATSPTRPGVISVDAVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARSFGVEQLALLTQKQLASMVEKSSIEDVMKVLLASRKQDMNQLWSTCSHLVSKSGLPPEVLAKHLPIDVVAKIEELRLKTSLVRRPLIPHHHPHPHHHHDHISATADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPVAKTPLHLAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLAHIEPNKLRLCLELVQSAALVLSREEGNANPPSSTTIYPPMNEDHNSCSSNSHITNLNLDARLVYLNLGATSSSGQIGSRLDGDEDSSHNSQNRHGSQGGSCDPTTMHLKGQHMKWSFIGSDNGIRVVREDKENLRDKGWA 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0652 516 MobiDBLite consensus disorder prediction 449 482 - -
Lele08g0652 516 FunFam regulatory protein NPR5 isoform X2 249 366 - -
Lele08g0652 516 Pfam BTB/POZ domain 16 111 IPR000210 GO:0005515
Lele08g0652 516 SMART ANK_2a 318 347 IPR002110 GO:0005515
Lele08g0652 516 SMART ANK_2a 283 313 IPR002110 GO:0005515
Lele08g0652 516 CDD BTB_POZ_NPR_plant 8 163 - -
Lele08g0652 516 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 483 IPR044284 GO:0099402
Lele08g0652 516 SUPERFAMILY Ankyrin repeat 277 361 IPR036770 -
Lele08g0652 516 ProSiteProfiles Ankyrin repeat region circular profile. 318 348 - -
Lele08g0652 516 FunFam regulatory protein NPR5 isoform X1 4 196 - -
Lele08g0652 516 ProSiteProfiles Ankyrin repeat profile. 318 350 IPR002110 GO:0005515
Lele08g0652 516 Gene3D - 250 366 IPR036770 -
Lele08g0652 516 ProSiteProfiles BTB domain profile. 25 110 IPR000210 GO:0005515
Lele08g0652 516 SUPERFAMILY POZ domain 8 161 IPR011333 -
Lele08g0652 516 SMART BTB_4 25 163 IPR000210 GO:0005515
Lele08g0652 516 Gene3D Potassium Channel Kv1.1; Chain A 4 196 IPR011333 -
Lele08g0652 516 Pfam Domain of unknown function (DUF3420) 198 260 IPR024228 -
Lele08g0652 516 Pfam Ankyrin repeats (3 copies) 266 348 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0652 Lele-ChrLele08 3970143 3972708 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lele08g0652 BTB 1.5e-14 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0652 08 3970143 3972708 Lele08g0652 08 3970143 3972708 ECH
Lele05g0805 05 4832373 4834670 Lele08g0652 08 3970143 3972708 hybridization
Lele06g0655 06 3928379 3930668 Lele08g0652 08 3970143 3972708 hybridization