Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0646 ATGACAATTCACGTTACTCCAAAGGCTAAGCCTAAATTCAGATCTCCAATTCTCCTGCTTGCCCTGGCAATTACGGCAGTCGCCCTATTGTTCCTATGTCGCTTTCTGGTTTCCACATCCGGATCCTCACTCCTCATCTCAACATCCCTTCAAAACGAGGTGACACGGGGGCGCCATGAAAGGTACTTGTACTGGGGCACTAGAATTGACTGCCCGGGAAAACGCTGCGAAACTTGTGCAGGTTTGGGTCATCAGGAGTCCAGCCTCAGAACTTTTGTCATGCCATCAAGGATGTGTATTAATCCAATGCATAATAAGAAAGGGAACTTTCATCTGTCCAATACCAGTTCAGAGGCAAGTTGGGCAGCAAGTTCTTGTCCCATGGACACTTTATATGATATAGACCTCATATCTGAGACTGTTCCTGTAATTTTGGACTATTCAAAAGAGTGGTATCGGGTTCTATTAACAAGCATGAAATTGAGAGCACAAGGAGCTGGTCATGTGGAAGGAGTCAGCCGCATTGATCTTAAAGAAAATACTAAATTCTCCAATCTCTTGCTCATAAACAGGACTGCCAGCCCTCTTTCCTGGTTTATGGAATGCAAGGACCATAACAAACGAAGTTCTGTGATGTTACCATATTCATTTTTGCCCTCAATGGCAGCGAGGAAGCTCAGAGACGCAGCTGAAAAGATCAAAGCAGACCTTGGAGATTATGATGCCATCCATGTTCGTTGTGGTGATAAATTAAAGACGAGGAAGGACAGGTATAAACTGGCATATTCATCAAACTATAGCCACATCCTGGATCCCCTGATCAAGAACAATTACCAGCTATTCATGGTCGAGAGGATTGTCCTGATGGGTGCGAAAACTCCTCAACCCCCAAAAAAGCTTCAGCTCACTTTTCCCCGTGACCCTGTCAAGACGTTGCATTTATCATCTTATGGGACTGGCATCGCTCATATCGAAAGTAAAGGGAAAAGTTATCAAATGTTCTTTCATTGTTTGACTCGTTTCATGCAAATGGTTTCCCACGTTCCCATATCAACCCGGCTGGGCAACATGCAGGTGCGTAGACCCCAGCCAGATGGGCGCGCCAATTACATTATAACGAAGAATGAGACGGTGTTGGAAACCCCTGTGGTCATGCCTTACCTTGTCCGAGAGAAATTGTTCATTGGGAATATCAGTGACGCTGCGCAGATCCTTCAAAATGGTAGCGACGAAATCACGCATATTTTATCGGTTCTTAGCTCTGCTTCAATATCATTCTTTTCCGAATGGCGAAGTAGCCTAACGATCCCGGCAAAGGAAATTAAGAAGTTATATGTGGGTGGTGGTCATGGTGGTGCTCCTGATGAAGACTTGGGTGATATGTCAAGGAGTCCGTTGTCACCGGAGAACCTTTTGTACTCGTTGGAATATGCAGGCAAGGATTTGAAGTTGGTCAGGATGGCTGTCCCTCTGAGGGATACAGAAAATGAAAATTTGTTGGATTACTTGGATGCTTGCCTCAATTTTATTGATCGAAGTAGGAAAGATGGTTCTGTTTTGGTGCACTGCTTTGCTGGAGTATCAAGAAGTGCAGCAATTATTACAGCATATCTGATGAGATCCGAACATCTATCTCAAGAAGATGCCCTCCAATCATTAAGGAAGAGCTGTGAATTTGTTTGCCCCAATGATGGTTTTCTAGAACAGTTAAAAATGTTTGAGGAGATGGGCTTTAAGGTAGATCGCTCTAGCTCTATATACAGGCGCTTTCGTTTGAGATTACTGGGTGAGAATTATAACTCCGGGGCGAGAATAGACAGTTCTATACTTGGAGCTGATCCTGGAATGCCTGTTAGTGTTGCTTCAGAAGTAGAAGGAGCTCCACATGCAGGAAATAATCGCAGTCCTACATATCGCTGTAAGAGGTGCCGGCGTGTAGTTGCATTGAAGGAACATGTTATAGACCATTTGCCAGGTGAAGGCGAGACATCCGGTGAAGGCGAGACATCCAGTGAATGGCATAAGTGGAGAAGTGACAGCCTTTTTAACAAATACAACGAATCTGAGTGTTCTTCCATATTTATTGAGCCACTACAATGGATGAAAGCAGTTGAGGAAGGTGCATCGGATGGGAAGTTGAGCTGTGCCCATTGTGACGCCCGCTTGGGAAACTTCAATTGGTTTGGCATACAATGCAGCTGCGGAAGCTGGATAACCCCTGCCTTTCAGATCCACAAGTGCCGAGGATTTCCTCATGGCCCTCGTTTATGTAATTTGTACAGGTTCCTAATTCTCATTCATCCAACAATTCCAATCCTGAATTGGATTTCTAAAGATTCAAGTAAAGGTGGGGACAAAACCGAACTTCGAACAGGATACATGGAAAGAAAAGGAGGAACCCTACTTGAGGATGGTATCAAAAAATGTCTGACCATCCTCACATCAGAATCAGCGAGACTCCAGGATTTCATTTCATGA 2478 0.4447 MTIHVTPKAKPKFRSPILLLALAITAVALLFLCRFLVSTSGSSLLISTSLQNEVTRGRHERYLYWGTRIDCPGKRCETCAGLGHQESSLRTFVMPSRMCINPMHNKKGNFHLSNTSSEASWAASSCPMDTLYDIDLISETVPVILDYSKEWYRVLLTSMKLRAQGAGHVEGVSRIDLKENTKFSNLLLINRTASPLSWFMECKDHNKRSSVMLPYSFLPSMAARKLRDAAEKIKADLGDYDAIHVRCGDKLKTRKDRYKLAYSSNYSHILDPLIKNNYQLFMVERIVLMGAKTPQPPKKLQLTFPRDPVKTLHLSSYGTGIAHIESKGKSYQMFFHCLTRFMQMVSHVPISTRLGNMQVRRPQPDGRANYIITKNETVLETPVVMPYLVREKLFIGNISDAAQILQNGSDEITHILSVLSSASISFFSEWRSSLTIPAKEIKKLYVGGGHGGAPDEDLGDMSRSPLSPENLLYSLEYAGKDLKLVRMAVPLRDTENENLLDYLDACLNFIDRSRKDGSVLVHCFAGVSRSAAIITAYLMRSEHLSQEDALQSLRKSCEFVCPNDGFLEQLKMFEEMGFKVDRSSSIYRRFRLRLLGENYNSGARIDSSILGADPGMPVSVASEVEGAPHAGNNRSPTYRCKRCRRVVALKEHVIDHLPGEGETSGEGETSSEWHKWRSDSLFNKYNESECSSIFIEPLQWMKAVEEGASDGKLSCAHCDARLGNFNWFGIQCSCGSWITPAFQIHKCRGFPHGPRLCNLYRFLILIHPTIPILNWISKDSSKGGDKTELRTGYMERKGGTLLEDGIKKCLTILTSESARLQDFIS 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0646 825 Pfam Dual specificity phosphatase, catalytic domain 483 575 IPR000340 GO:0008138|GO:0016311
Lele08g0646 825 ProSitePatterns Tyrosine specific protein phosphatases active site. 521 531 IPR016130 GO:0016311|GO:0016791
Lele08g0646 825 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 500 555 IPR000387 GO:0016311|GO:0016791
Lele08g0646 825 Gene3D Protein tyrosine phosphatase superfamily 388 596 IPR029021 -
Lele08g0646 825 FunFam Dual specificity protein phosphatase 12-like 388 596 - -
Lele08g0646 825 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER 385 748 - -
Lele08g0646 825 CDD DSP_DUSP12 388 581 - -
Lele08g0646 825 ProSiteProfiles Dual specificity protein phosphatase domain profile. 385 579 IPR020422 GO:0006470|GO:0008138
Lele08g0646 825 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 386 579 IPR029021 -
Lele08g0646 825 SMART dsp_5 385 576 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0646 Lele-ChrLele08 3910948 3922164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0646 484 575 Protein tyrosine phosphatase (PTP) family AT3G06110 37.634 6.13e-15 71.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0646 08 3910948 3922164 Lele08g0646 08 3910948 3922164 ECH
Lele05g0800 05 4772605 4778629 Lele08g0646 08 3910948 3922164 hybridization
Lele06g0648 06 3869654 3872118 Lele08g0646 08 3910948 3922164 hybridization