Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0644 ATGGACAACTCTGAGCTCTACCAGCTCCTCGCTGGCAACGGCACTTCCTTCTTCTCCCCCTCATCGTACGGCCTGCCTCCCGCTGCTGCTGCCTCCACAATGCACAGTTTCTGCAGTTCCTCTTATTACCCCTTGGATTCTTCCGAAATTACTGATACGCCCCAGCAAGATAGAGCCCTCGCCGCTCTGAAGAATCACAAGGAGGCTGAGAAGCGCCGGAGGGAGAGGATCAATTCTCACCTCGATAAGCTTCGCACTCTTCTTCCCTGTAATTCTAAGACTGACAAGGCCTCGCTTCTAGCAAAGGTTGTCCAACGAGTGAGAGAGCTGAAACAGCAAACTTCACAAATCCCCGAACTCGAAACCATTCCTTCGGAGACAGATGAAATCACCGTGCTGTCCACTAGCGGCGACTACGCCGGAGACGGCAGGCTCATATTCAAAGCCTCCCTATGCTGCGAAGATCGCTCCGACCTCATGCCTGATCTCATCGAAATCCTAAAGTCGCTGCATCTCAAAACCCTCAAAGCAGAAATGGCAACACTAGGAGGAAGAACCCGAAACGTTCTTATCGTGGCCGCCGACAAAGACCACAGCATCGAATCAATCCACTTCCTCCAGAACGCATTGAAATCTCTGCTCGAACGCTCCAACTCAAGCGAAAGATCCAAACGGCGTCGTGTACTGGACCGCAAAATGATTGTCTGA 708 0.5198 MDNSELYQLLAGNGTSFFSPSSYGLPPAAAASTMHSFCSSSYYPLDSSEITDTPQQDRALAALKNHKEAEKRRRERINSHLDKLRTLLPCNSKTDKASLLAKVVQRVRELKQQTSQIPELETIPSETDEITVLSTSGDYAGDGRLIFKASLCCEDRSDLMPDLIEILKSLHLKTLKAEMATLGGRTRNVLIVAADKDHSIESIHFLQNALKSLLERSNSSERSKRRRVLDRKMIV 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0644 235 Gene3D - 56 122 IPR036638 GO:0046983
Lele08g0644 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 110 IPR011598 GO:0046983
Lele08g0644 235 SMART finulus 67 116 IPR011598 GO:0046983
Lele08g0644 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 120 IPR036638 GO:0046983
Lele08g0644 235 CDD bHLH_AtAIG1_like 56 132 - -
Lele08g0644 235 FunFam transcription factor bHLH30 56 119 - -
Lele08g0644 235 CDD ACT_UUR-ACR-like 150 214 - -
Lele08g0644 235 PANTHER TRANSCRIPTION FACTOR BHLH30 49 231 IPR045847 GO:0003700|GO:0006355
Lele08g0644 235 Pfam Helix-loop-helix DNA-binding domain 65 110 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0644 Lele-ChrLele08 3894201 3895689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0644 6 220 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 65.044 4.56e-88 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele08g0644 HLH 2e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0644 08 3894201 3895689 Lele08g0644 08 3894201 3895689 ECH
Lele05g0797 05 4749987 4751434 Lele08g0644 08 3894201 3895689 hybridization
Lele06g0645 06 3845519 3846998 Lele08g0644 08 3894201 3895689 hybridization