Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0636 ATGAAGTCCTGGTCCTTAGATTACTGGAGGAGCTACTTTCGAACGGCGAACTGGGATATATTTGATATTATCGACCATGCGATCATGGTGGCCGCTTCTGATTGTCCGAAGGAGTTTCGATTGCGAAGAGATGGAATCGCGGAACGCTTGTTTTCTTGCCGGATGACTCGTTGTTTGGGTTGTGAGCGAGTGGAGTTGGCGGTGTCCGATATTGACGAGGACTACGATGGAGGTTGCAAGAGTGGTTTTGATAGAGACGGAGCTGAAGTGGAAGCAGGTGCAAGTAAAGAGAGCAAGGCCCATAGTAGCAGAGATGACCATGGAGAGATGAACATGAACCACGTTAGCAATTATAGCTACGGAGATGCTGAAGCATTGACGGATGAGATCGAAGAAGAGTCTCAATTGGTTGGTGAGATTTTGAGGATCAAGGAAATTCTTCATAACAGCGAAGAAGAGTCTGAATCGGAATTATTTGAGTCGTTGAGGAGGCTCCAGCTGATGGAACTGAGTGTGGATCTTCTAAAGGCGACTGAGATTGGAAAGGCTGTCAATCCTTTCCGAAAGCATGGATCAAAGGAGATTCGTCAACTTGCACGAACTCTTATTGATGGCTGGAAGGAAATGGTAGATGAGTGGGTCAATGCTACCACCACAACCAGTGCAGGTTATGAAGGCACCCCAGATTCAGTAAATCCATCTGTTGTTGATGAAGAGGAAGAAGAAGGGCTTCCATCACCTCCTATGGATGAAGGGGCTTTCTTTGAAGCTCAAACTGCGTCAATGGAGTTATCACAGTTCTTCGATGGCATGGATGATGATGCAAATCCTCGGCAGAGTGGGGAATTCATCAAGAACCGGGATAATGGCAGAAGACCAGCTCTGGTCAATCAAAACATAATAAAGAGGAAACAACAGGCCTCCGTTGGGGTGGATGCGATGGTCAAAGACAGCAAGAATCAGCAAGCAAAGAGAAATGAGGCTGTTGCTAAGCTAAATAAATCAGCAACTGTTGGTCCTGGTCCTGGCAGACCATTGAAATCAAGCATGCAACGAAGAGAGAATATGGAGCCAAGGATGTTGAAAAAGATGGACAGGAGTGGTGTCCCCAAGAGGCCTCTTGCTGGTCCGCAGGATAAGTCGAAGAATTCAGATGATGCTTCAGTCCAAATGAAGCTAGAAGCCACTAAGAGGAAACTTCAGGAGAGTTATCAACAAGCTGAAAATGCCAAGAAGCAGCGTACAATCCAGGTTATGGAGTTGCATGATCTCCCCAAGCAAGGAGGGATTAGCCACAGAAACACACATTTCAAACCTATGAAGAACCAAAACAGGAATTGGGCTCAGGGACGAAGATAG 1359 0.4636 MKSWSLDYWRSYFRTANWDIFDIIDHAIMVAASDCPKEFRLRRDGIAERLFSCRMTRCLGCERVELAVSDIDEDYDGGCKSGFDRDGAEVEAGASKESKAHSSRDDHGEMNMNHVSNYSYGDAEALTDEIEEESQLVGEILRIKEILHNSEEESESELFESLRRLQLMELSVDLLKATEIGKAVNPFRKHGSKEIRQLARTLIDGWKEMVDEWVNATTTTSAGYEGTPDSVNPSVVDEEEEEGLPSPPMDEGAFFEAQTASMELSQFFDGMDDDANPRQSGEFIKNRDNGRRPALVNQNIIKRKQQASVGVDAMVKDSKNQQAKRNEAVAKLNKSATVGPGPGRPLKSSMQRRENMEPRMLKKMDRSGVPKRPLAGPQDKSKNSDDASVQMKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGGISHRNTHFKPMKNQNRNWAQGRR 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0636 452 ProSiteProfiles TFIIS N-terminal domain profile. 138 213 IPR017923 -
Lele08g0636 452 MobiDBLite consensus disorder prediction 350 369 - -
Lele08g0636 452 MobiDBLite consensus disorder prediction 90 112 - -
Lele08g0636 452 SMART TFS2_5 137 212 IPR003617 GO:0005634
Lele08g0636 452 MobiDBLite consensus disorder prediction 333 452 - -
Lele08g0636 452 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 439 IPR044805 -
Lele08g0636 452 MobiDBLite consensus disorder prediction 385 405 - -
Lele08g0636 452 Pfam TFIIS helical bundle-like domain 162 210 IPR017923 -
Lele08g0636 452 CDD TFIIS_I 139 211 - -
Lele08g0636 452 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 136 220 IPR035441 -
Lele08g0636 452 MobiDBLite consensus disorder prediction 220 247 - -
Lele08g0636 452 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 128 223 IPR035441 -
Lele08g0636 452 Coils Coil 390 417 - -
Lele08g0636 452 MobiDBLite consensus disorder prediction 90 111 - -
Lele08g0636 452 MobiDBLite consensus disorder prediction 436 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0636 Lele-ChrLele08 3840577 3843208 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lele08g0636 Med26 8.4e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0636 08 3840577 3843208 Lele08g0636 08 3840577 3843208 ECH
Lele05g0792 05 4707832 4710965 Lele08g0636 08 3840577 3843208 hybridization
Lele06g0637 06 3801483 3804119 Lele08g0636 08 3840577 3843208 hybridization