Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0614 ATGTCAAATAACAGAAACACTCATTGGTGTTATAGTTGCAGGAGGCCAGTTCAGCTGCGGGGGAGAGATGTGGTTTGCCCTAATTGTAATGAGGGATTTGTTCAAGAACTTAATGATATGGTCATCAACCCGCTAGAATTATTTGGACTAGACAATGTTGAAGAACGTGACCGGAGGTTCAGAATTATGGAAGCCTTCTCTGCCTTTATGAGGCATCGACCAGTAAATAGAAGCCATAGGCATGACATCATAGTTGGATCAGATTCAATTCCTGAAAATGGTCCAGGGTATGCTCCTTTGCTTCTCTTTGGTGGCCAGATTCCTGTCAGATTGTCTGGACATGGTGGCGTCGAATCTCTTTTCAATGGGACTCCTGGAATTGGTCTAATGCAAGGCAATACAGGTGACTATTTTATTGGTCCCGGACTGGAGGAACTGTTCGAGCAGCTTTCAGCTAATGACAGGCGAGGTCCTCCTCCGGCTTCGAGGTCCTCTATAGATGCAATGCCTACTATTAAGATCACACATAAGCTTCTTCGGTCAGACTCACATTGTCCAGTATGCCAAGATAAGTTTGAGCTGGGGTCTGAAGCAAGGCAAATGCCATGTAAGCATATATATCACTCAGATTGTATTGTACCCTGGTTGGTGCAGCATAACTCCTGCCCTGTTTGTCGCCAGGAGCTGCCACCACAAGGATTGAGCGGCAACCGTGGTTCCAATGGTAGAACTAGAAGCAGTTCTGATAGTAATAATGGCAATGGAAGGGTAAGTGGTAGGGAGAACCAGGGAAGACGGAACCCATTCTCCTATTTTTGGCCGTTCCGTTCATCTAATTCGAGCAACAATGGAGCAGGGGGAAGCAGCTCACCAACACAGCCTATCCCTGAGAATAGCCACCACACCGGCTATTCCGGATGGCCATTTGATCTGGGTTCTGCTGTTTTAAAGTTTTATGTTCAATCTAGGAAAATTGGCCTCCGTATCATATGCCAAAGACTTGAAGGAAATCTAGCGCTCTGTAAATTGAGCAATACAATACTTTTCTTGTTACATCGAGTGCTTGAACCAAAAACCCCAAAGGTTGGAGCACTAAAATATCATACCATCCGTAACCGTAAGACTTGGAGAAGAAATGAAAAACTGCCTTTATATCATTAA 1161 0.4479 MSNNRNTHWCYSCRRPVQLRGRDVVCPNCNEGFVQELNDMVINPLELFGLDNVEERDRRFRIMEAFSAFMRHRPVNRSHRHDIIVGSDSIPENGPGYAPLLLFGGQIPVRLSGHGGVESLFNGTPGIGLMQGNTGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPTIKITHKLLRSDSHCPVCQDKFELGSEARQMPCKHIYHSDCIVPWLVQHNSCPVCRQELPPQGLSGNRGSNGRTRSSSDSNNGNGRVSGRENQGRRNPFSYFWPFRSSNSSNNGAGGSSSPTQPIPENSHHTGYSGWPFDLGSAVLKFYVQSRKIGLRIICQRLEGNLALCKLSNTILFLLHRVLEPKTPKVGALKYHTIRNRKTWRRNEKLPLYH 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0614 386 SMART ring_2 185 225 IPR001841 -
Lele08g0614 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 121 230 - -
Lele08g0614 386 MobiDBLite consensus disorder prediction 280 300 - -
Lele08g0614 386 MobiDBLite consensus disorder prediction 233 265 - -
Lele08g0614 386 Pfam Ring finger domain 184 226 IPR001841 -
Lele08g0614 386 CDD RING-H2_RNF126_like 185 226 - -
Lele08g0614 386 MobiDBLite consensus disorder prediction 231 267 - -
Lele08g0614 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 232 IPR013083 -
Lele08g0614 386 MobiDBLite consensus disorder prediction 280 301 - -
Lele08g0614 386 SUPERFAMILY RING/U-box 165 232 - -
Lele08g0614 386 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Lele08g0614 386 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Lele08g0614 386 FunFam E3 ubiquitin-protein ligase RING1-like 148 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0614 Lele-ChrLele08 3728949 3730777 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0614 114 230 C3H Transcription Factor Family AT5G01980 41.322 5.67e-25 104