Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0606 ATGGAACAAGAGCCGCTTCTGCCGAGGGATAATCTTCGTCGCACTCGTGGGAGTAATCCCATGCTTCGCGCCTCCACCTTACGCGCCACTTTCACCCTCCCCTTAACTCGCTACACCACCCGTCTGATCTCGGCGGAGCATCACCGGATTTTCCTCGGTGATTGTACGGAGAGCCCATCCGAGGACGACGATGACCGACCCCTTGGGGACGGCAGTTGTGCCTATTCGAGGCCCATTTTGGTTCTGGACCTTGTATGGAACCTGGCCTTTGTACTGGTCACTGCTGGTGTACTTCTCTCCACATTTAGCGAGCATCCGTCCACCCCTTTGAGGCTTTGGCTCTGTGGGTATGCCTTTGAGTGTATTCTGCATATGATTGTTGTGTGTTTCGAGTATCGGCGGAGGACTCGAGATTTTTACGGTCCTGAGCTTGGGCTTTCGCTTTCCCAGAGTTGGAACAGCAATGTGAAGAAGTTAGAGTCTATGAACACACTGGTGTCATCTATTTGGTGGGTCCTTGGATTTTATTGGATTGTGGTTGGTGGCCAGCAACTTTTGCAAGACTGCCCTCGTATCTACTGGTTATCAGTGGTCTTTCTGGCCTTTGATGTGTTTTTTATTATCTTTTGCATTGGGATGGTATGTATAGTTTTCTTCGCTCTCTTCTTTTTCATCCCGATAGTAGCATTAGCTTATGCTATGAGAATCAGAGAAGGTGCATCAGAAGAGGATATCAGGTCTCTTCCTAAGTATAAGTTTAGTCAGTCAAATTCATTGGTGATGGTTGACGACAGTAATAAGCAAGTTTCTAAAGCAAGAATGGGTGCAAGCAATAGCAACCTTGTCAGTGAATTATATCTCAACCCAGATGATTCTTGCAAATATGAAGTTGCCTCCGCTTATTTTGCATTGCAGGAATGCTGCATCTGCCTTTCTCCGTACGTTGAAGGGGCAGAACTTTATCGCCTTCCCTGCACACACCATTTTCATTGTGGATGCATCAGCAGATGGCTTCGGACAAAAGCAACCTGCCCTCTCTGCAAATTTAATATTCTTAGAAGTGAGACATTGGTTTGA 1077 0.4689 MEQEPLLPRDNLRRTRGSNPMLRASTLRATFTLPLTRYTTRLISAEHHRIFLGDCTESPSEDDDDRPLGDGSCAYSRPILVLDLVWNLAFVLVTAGVLLSTFSEHPSTPLRLWLCGYAFECILHMIVVCFEYRRRTRDFYGPELGLSLSQSWNSNVKKLESMNTLVSSIWWVLGFYWIVVGGQQLLQDCPRIYWLSVVFLAFDVFFIIFCIGMVCIVFFALFFFIPIVALAYAMRIREGASEEDIRSLPKYKFSQSNSLVMVDDSNKQVSKARMGASNSNLVSELYLNPDDSCKYEVASAYFALQECCICLSPYVEGAELYRLPCTHHFHCGCISRWLRTKATCPLCKFNILRSETLV 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0606 358 Pfam Ring finger domain 306 348 IPR001841 -
Lele08g0606 358 SMART ring_2 307 347 IPR001841 -
Lele08g0606 358 SUPERFAMILY RING/U-box 306 353 - -
Lele08g0606 358 PANTHER TARGET OF ERK KINASE MPK-1 69 353 - -
Lele08g0606 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 357 IPR013083 -
Lele08g0606 358 ProSiteProfiles Zinc finger RING-type profile. 307 348 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0606 Lele-ChrLele08 3662674 3666040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0606 74 354 C3H Transcription Factor Family AT1G68070 43.686 1.27e-83 256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0767 05 4513259 4516568 Lele08g0606 08 3662674 3666040 hybridization
Lele06g0603 06 3613503 3616870 Lele08g0606 08 3662674 3666040 hybridization