Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0573 ATGGGAAGGCCTCCTTGCTGTGAGAAAATTGGCATCAAGAAGGGTCCATGGACACCTGAGGAGGACATCATTCTTGTTTCTCACATCCAAGAACACGGTCCGGGAAATTGGAGATCAGTTCCTACTAATACTGGGTTGTCAAGGTGCAGCAAAAGTTGCAGGCTTAGATGGACGAACTACCTCAGGCCAGGAATCAAGAGGGGAAACTTCACTGCCCATGAGGAAGGAATGATAATTCATTTGCAAGCTCTCCTGGGTAACAAATGGGCAGCCATAGCTTCGTACCTTCCTCAAAGGACAGATAACGATATAAAGAACTATTGGAACACGCATCTGAAGAAGAAGCTGAAAAAATTTCAAACAGGATTGGACCCCCACCTGGCAGCGAACTCCACAATAACAACTAGTCAGTTTGCTTCAAAAAGCTTTAATGAGAGAGAGAATTTAGATATGTTGGGAAATAACCATGGCTCGTCTCAAAGGTTAAGTCAGTCTCAATCATCCACCTACGCATCCAGCACCGAGAACATCTCTCGCCTCTTAGAAGGTTGGATGAGATCCTCCCCAAAGCCAGGCACAAGTAATAATCTTCTCAAAGCAACCACCCAAGATAACAAGGAGCTTCAGAGAAACATCGAAAATAACAGTAACATGGTGAAGTCTGCTCTAAGTTTGATGTCCAACAAAAACAAAGACGAGCGAGAAGATCAGGGTGGTGGTGGTGATATGATGTCCCGTGAAGAGTTTGATTCCATTTTGTCTTATGAGAACCTTAATAATGCTGCTTGGGAGAAGTCCACGGGCGATTCTATGCCTCCAACCCAGAAGATTTCTGAAACTACTGCTGATGATAATGATGAAGACAAGGTTCGTGTTATGGCTCATGATGAGAGGAATAAGCAAAGATATGAGAACGGTGCTGCTGATCCTCCATTGTCAGTTCTTGAGAAGTGGCTCTTAGATGAAAATGCTGGTCAAGTAGAGGAGATGATGGAATTATCCCTTACTTTCTAA 1014 0.4389 MGRPPCCEKIGIKKGPWTPEEDIILVSHIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTAHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQTGLDPHLAANSTITTSQFASKSFNERENLDMLGNNHGSSQRLSQSQSSTYASSTENISRLLEGWMRSSPKPGTSNNLLKATTQDNKELQRNIENNSNMVKSALSLMSNKNKDEREDQGGGGDMMSREEFDSILSYENLNNAAWEKSTGDSMPPTQKISETTADDNDEDKVRVMAHDERNKQRYENGAADPPLSVLEKWLLDENAGQVEEMMELSLTF 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0573 337 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lele08g0573 337 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele08g0573 337 Gene3D - 68 132 - -
Lele08g0573 337 Coils Coil 198 218 - -
Lele08g0573 337 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele08g0573 337 MobiDBLite consensus disorder prediction 227 243 - -
Lele08g0573 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lele08g0573 337 MobiDBLite consensus disorder prediction 263 279 - -
Lele08g0573 337 MobiDBLite consensus disorder prediction 263 289 - -
Lele08g0573 337 FunFam MYB-related transcription factor 13 66 - -
Lele08g0573 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lele08g0573 337 FunFam Transcription factor MYB60 68 140 - -
Lele08g0573 337 Gene3D - 13 66 - -
Lele08g0573 337 CDD SANT 16 61 IPR001005 -
Lele08g0573 337 MobiDBLite consensus disorder prediction 226 245 - -
Lele08g0573 337 SMART sant 13 63 IPR001005 -
Lele08g0573 337 SMART sant 66 114 IPR001005 -
Lele08g0573 337 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 232 - -
Lele08g0573 337 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lele08g0573 337 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele08g0573 337 MobiDBLite consensus disorder prediction 149 172 - -
Lele08g0573 337 CDD SANT 69 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0573 Lele-ChrLele08 3463909 3465317 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0573 1 145 MYB Transcription Factor Family AT5G62470 78.767 4.25e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele08g0573 Myb_DNA-binding 6.6e-15 CL0123