LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele08g0568	ATGAGTTTTCATCACTTCATAAATGGAGGCGACGGTTTCCGCGGGGCTATAAAACAATTACCCTCCGCTCCTCTTCTAGTTCCCCAGTACCCACTCTCTCCCATTTTTGGGGCCATAGGTGGTCATCCCGGTGAGAACGAGTCTTACAAATCTGGGATTGGATTCCAGATTCTGAACCCTTCCTTCATGGGGTCCAGAGCTGCAGAAAAAAGCGTCGGTGAAGTCGACGGCCATTTCCTGGTCGAGACGGACGGCCTGTCCTTGAAACTTAGTGAAGAAGCCGAAGCTAAGAGGCCGGATGCCGGCAAGAGTGGCTACACGAAGCTCTGTGCCAGAGGCCACTGGAGGCCCGGTGAAGATGCCAAGCTCAAAGAGCTGGTCGCTCAGTATGGTCCTCAAAACTGGAACTTGATCGCCGAGCATCTCCAAGGACGATCAGGTAAGAGTTGCAGATTGAGGTGGTTTAACCAGCTGGATCCTAGGATTAACAGGAGGGCTTTCTCCGAGGAAGAAGAGGAGAGGCTGTTGGGCGCTCATAAGGCGTACGGTAACAAGTGGGCTCTGATTGCGAGGCTGTTCCCGGGGAGGACCGATAATGCGGTGAAGAACCACTGGCACGTGATCGTGGCGAGGAGGCAGAGAGAACAGTCAAACGTTTTCAGGAGGAGGAAACCCACTTCTTCTGAGGACAATATTGCAAATGGATTAAAACTCAGCCTAACCAACAATACAGGCAGTGAATCGAGCATCTCAAGCACCAGGGACGAGTCTGGTTCAACCTGCACTAATCTCTCACTCACTCCCTCGTCCGCCAAACCCTCTCCCTTTTGCTCTAATATGAGCCCAGGCCAGGGAACACCGATCGGTACGCTTGAGTATATATTTTTTGTGTGTATTATTAGAGGAAATAGTGGAGGCAGGGGAAAGGGGAAGGGTGTGGGGCAATCGAATAATAATTCGGATTCAAAATCGGAAGTATCGGCGAGCGAGTCAGTGGGAACCAACAGGAACAATTTGTCACATTCAGGGGGAAGGGAAAACGTGGGAGATAAGATAGAGGTGGTATTCATTGATTTTCTGGGGGTGGGAACTGGCGCATGA	1101	0.5114	MSFHHFINGGDGFRGAIKQLPSAPLLVPQYPLSPIFGAIGGHPGENESYKSGIGFQILNPSFMGSRAAEKSVGEVDGHFLVETDGLSLKLSEEAEAKRPDAGKSGYTKLCARGHWRPGEDAKLKELVAQYGPQNWNLIAEHLQGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLLGAHKAYGNKWALIARLFPGRTDNAVKNHWHVIVARRQREQSNVFRRRKPTSSEDNIANGLKLSLTNNTGSESSISSTRDESGSTCTNLSLTPSSAKPSPFCSNMSPGQGTPIGTLEYIFFVCIIRGNSGGRGKGKGVGQSNNNSDSKSEVSASESVGTNRNNLSHSGGRENVGDKIEVVFIDFLGVGTGA	366

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele08g0568	366	Gene3D	-	112	163	-	-
	Lele08g0568	366	PANTHER	MYB PROTEIN-RELATED	112	286	-	-
	Lele08g0568	366	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	159	213	IPR017930	-
	Lele08g0568	366	ProSiteProfiles	Myb-like domain profile.	159	209	IPR001005	-
	Lele08g0568	366	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	112	158	IPR017930	-
	Lele08g0568	366	Pfam	Myb-like DNA-binding domain	164	207	IPR001005	-
	Lele08g0568	366	Pfam	Myb-like DNA-binding domain	112	158	IPR001005	-
	Lele08g0568	366	MobiDBLite	consensus disorder prediction	229	278	-	-
	Lele08g0568	366	CDD	SANT	166	206	IPR001005	-
	Lele08g0568	366	ProSiteProfiles	Myb-like domain profile.	112	158	IPR001005	-
	Lele08g0568	366	CDD	SANT	115	156	IPR001005	-
	Lele08g0568	366	Gene3D	-	165	235	-	-
	Lele08g0568	366	MobiDBLite	consensus disorder prediction	306	345	-	-
	Lele08g0568	366	MobiDBLite	consensus disorder prediction	310	344	-	-
	Lele08g0568	366	MobiDBLite	consensus disorder prediction	216	278	-	-
	Lele08g0568	366	FunFam	MYB transcription factor	112	163	-	-
	Lele08g0568	366	SUPERFAMILY	Homeodomain-like	112	205	IPR009057	-
	Lele08g0568	366	SMART	sant	163	211	IPR001005	-
	Lele08g0568	366	SMART	sant	111	160	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele08g0568	Lele-ChrLele08	3433416	3434722	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele08g0568	102	363	MYB Transcription Factor Family	AT5G17800	48.905	5.70e-72	225

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele08g0568		Myb_DNA-binding	2.2e-15	CL0123