Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0558 ATGGTGTTCTGTGATCACTGTCAAATAAATGTAAATGGAATGCGACCGGACGACTCTTCATTATGTTGTGAACGCTGTGGGAAGGTGTTGGAAGATTTGTATTTTTCTCAAGAGGCTACTTTCCTTAAAGATTCATCTGGGCAGAGTAAACTATCTGGTAATCTTGTTAGAACAATTCAAAACGAGTATTCTGCTTCTCGCCAAAGAACATTGGATAGAGCACTCGATGAGATAAGATACCTAAGCCAAAACCTTGGAGTGGAAGATACCAGTTTGTCCACACAAGCTTTGGCCTTTTATAAAATAGCAATTGAACGGAATTTCACAAGGGGACGAAAATCAGAGCAAGTACAGGCTGCTTGTCTCTACATTGCATTCCGGGAAAATGATAAGCCATACCTTCTCATTGATTTTTCAAATTATTTAAGGACAAATGTCTATGTTCTAGGTGCAGTATTTTTACAGCTTTGTAAAGTATTAAGGCTTGAAGAGCACCCAATTGTTCAAAAACCTGTTGATCCTAGTCTTTTTATTTTTAAATATACAAAGAATTTATTAAATCAAAGGAATATGGGTGTCACTGAAACTGCACTGAGCATTGTTGCAAGCATGAAACGTGATTGGATGCAGACAGGGAGGAAGCCTAGTGGCTTATGTGGTGCAGCATTGTACATAGCGGCCCTTGCATACGGTTTTAAATGCTCAAAGTCTGACATCCTAAGAATTGTCCATGTATGTGAAGCAACATTGACCAAGCGTTTGGTCGAGTTTGAGAATACAACCTCTGCAAGCTTGACAGTTGAGGAGTTGAATATGATGGCAAAAGAGCGTGAAAAGATTCCGATAGAAAAACCAAATTGTGCATCAGAGGAACACGTCTCACAGGATCTACTGTGTGAACACAAGGATAGTGGTGTCCCACATTATGCCCATGGATTATGTGAAACCTGTTATAAGGATTTTGTTAAACTCTCTGGAGGACTTGATGGTGGTTTGGATCCTCCTGCATTCCAGCGTGCTGAGAGGGACAGAATGACAAAATCACTTCATGAGGAAAGTGGCAACCAGTCAAATGATTTGGAAAAAGCATCAAATGGGGAGTGTGCAGGCAGGAAAGAAGAGTTGCATGCTCCTGGGCCAGAAAGTGTTGGTGGATCTGATGTTGAGCAAATGGCTACTAAAGATGGTGGGAATGATGAATCACATAGAGAAGATATGAGTGCTAAAACTCATAATGAATCAGAAAGTCTCTCTGATATCGATGATTTGGAGGTTGAAGGCTACCTTCACAATGAGGAGGAGAAGCATTACAAGACGCTTATATGGACTGAAATGAATAGGGAGTATCTTGAGGAGCAAGCAGCCAAGGAAGCAGCCGCTGCTGCTGCTAAGGAAGCTTTTGAGGCAAATTTTCAAAACTGTTCCGAGGATATGCTAGCCGCAAAAGAGCTTGCTGAATCTGCTGCAGCAGCTGTGGCCAAATCCAGAAAGGAAAAGAAGCAGAGACGTGCCCAAGAGGCAAAAAATTCAGGTCCTGCTCAATCTGCTGCAGAGGCTATTCGGAAAATGTTGATAAATAAGAGGCTCAGCTCCAAAGTCAATCTTGATCGCTTGGATAATTTATTTGATGATAATGAGGCTCCGGAGAACAAGAAAGTACGATTTGAGCTGCACTCTGATAAAGATGGTAAATTAGAGCCTGAGCTAGAGGACAAAGACAAAGGAGATGATATGGGATCAGTTGATGAATTTGAGGATGGTTATATGGGCAAGGAAAATAATTCGTATGATGAAAAATTGGCGGAATATGACTATGGAGATGATGATTATGGCTATGATGATTACTGA 1848 0.4107 MVFCDHCQINVNGMRPDDSSLCCERCGKVLEDLYFSQEATFLKDSSGQSKLSGNLVRTIQNEYSASRQRTLDRALDEIRYLSQNLGVEDTSLSTQALAFYKIAIERNFTRGRKSEQVQAACLYIAFRENDKPYLLIDFSNYLRTNVYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFIFKYTKNLLNQRNMGVTETALSIVASMKRDWMQTGRKPSGLCGAALYIAALAYGFKCSKSDILRIVHVCEATLTKRLVEFENTTSASLTVEELNMMAKEREKIPIEKPNCASEEHVSQDLLCEHKDSGVPHYAHGLCETCYKDFVKLSGGLDGGLDPPAFQRAERDRMTKSLHEESGNQSNDLEKASNGECAGRKEELHAPGPESVGGSDVEQMATKDGGNDESHREDMSAKTHNESESLSDIDDLEVEGYLHNEEEKHYKTLIWTEMNREYLEEQAAKEAAAAAAKEAFEANFQNCSEDMLAAKELAESAAAAVAKSRKEKKQRRAQEAKNSGPAQSAAEAIRKMLINKRLSSKVNLDRLDNLFDDNEAPENKKVRFELHSDKDGKLEPELEDKDKGDDMGSVDEFEDGYMGKENNSYDEKLAEYDYGDDDYGYDDY 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0558 615 MobiDBLite consensus disorder prediction 393 421 - -
Lele08g0558 615 CDD CYCLIN 74 143 IPR013763 -
Lele08g0558 615 Gene3D - 173 267 - -
Lele08g0558 615 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Lele08g0558 615 Pfam Transcription factor TFIIB repeat 170 259 IPR013150 GO:0017025
Lele08g0558 615 Gene3D - 63 165 - -
Lele08g0558 615 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 533 IPR000812 GO:0006352|GO:0070897
Lele08g0558 615 MobiDBLite consensus disorder prediction 493 516 - -
Lele08g0558 615 MobiDBLite consensus disorder prediction 548 615 - -
Lele08g0558 615 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Lele08g0558 615 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Lele08g0558 615 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Lele08g0558 615 SUPERFAMILY Cyclin-like 74 163 IPR036915 -
Lele08g0558 615 FunFam Cyclin/Brf1-like TBP-binding protein 410 460 - -
Lele08g0558 615 SMART cyclin_7 176 259 IPR013763 -
Lele08g0558 615 SMART cyclin_7 76 158 IPR013763 -
Lele08g0558 615 SUPERFAMILY Cyclin-like 172 269 IPR036915 -
Lele08g0558 615 FunFam Transcription factor IIIB subunit 173 262 - -
Lele08g0558 615 Pfam Brf1-like TBP-binding domain 418 543 IPR011665 -
Lele08g0558 615 Coils Coil 490 510 - -
Lele08g0558 615 MobiDBLite consensus disorder prediction 548 601 - -
Lele08g0558 615 MobiDBLite consensus disorder prediction 344 421 - -
Lele08g0558 615 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
Lele08g0558 615 Gene3D Single helix bin 409 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0558 Lele-ChrLele08 3369738 3382004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0558 1 524 Inorganic Solute Cotransporters AT2G01280 41.791 4.22e-114 348
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0553 06 3313831 3324102 Lele08g0558 08 3369738 3382004 hybridization