Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0549 ATGTATCTTTCCCGGCGTATAATCACCAAAGCCTCTCATCTCCGTCACTTCTCAGAAGGCGCCGCAGCCGTTGCCCACCAAGAGCCTCTTGGCCTCCTCCCACCATTCACGTATCTCGAAGGTTTTCCGAGGCCCGACCCCAGATACGCCGAGACGATCCTTGCGATACCTCGCTCCGCTTCTGGAAGTATCATTTCTGCCAAAGAGCGAAAGGTTGGACGAGTGCCTAGCATCGTCTTTGAGCAAGAGGATGGCCAGCACGGCGGCAACAAGCGCCTCGTTTCCGTCCGTACCAATCAGATCCGAAAGCTCGTCAACCATCTCGGTCGATCATTCTTTTTGTCTAGACTCTTTGACCTGGAGGTTCGGTCGGAGTTCGTGTCCGAAGATATTGTAGAGAAGATTCGGGTTTTGCCCCGGCTGCGGATTCCGGTTAATTTTCTCTGGGAAGTCAACATTGGAGCGGCCTCTTCCCATGTAGATAGTACCTGTTCATTCTTTGGTTTTGCTTGTATACTTCACCTGCATGCAGGCAGCGATGTACCATTAAATGTCACATTCATAAGGGCTCCATCGCATGCTTTGTTGAAAGTTAACGTTCCTCTTCTATTCAGAGGAGAAGATGTATCCCCTGGATTGAAGAAAGGAAGAGACAACTCAAACAGGACCGTCATTAGCTTGCCTAGGGATCCTTTTCCCCTGTGGCTTTATGATCTTGGTCATTCCAGATTAGGCAACATGAACTCGCCGGGGAGGAGCAGAAGCATTTTGGTCTCGCCCACTAGCTCCCGCTCGGTGACCGAGACCGTCAATGGTTCGCATAACTTTGTAATCAAAGGCTACTCTCTCGCCAAAGGTATCGGCGTTGGTAAGCACATAGCTAGCGAGAATTTCTCTGTCGGAGGTTACCAGTGGGCCATTTATTTCTACCCCGACGGAAAGAATCCCGAGGATAATTCCACGTACGTTTCGGTGTTCATTGCGCTTGCGAGCGAGGGTACTGATGTGCGAGCACTGTTTGAGCTGACTTTGGTGGACCAGAGTGGAAATGGAAAGCACAAAGTTCATAGCCACTTCGATCGATCGCTTGAAAGTGGGCCTTATACGCTCAAGTACAGAGGCAGCATGTGGGGCTATAAGCGTTTTTTCAAACGAGCTCAGCTGGAGGTATCGACCTTCCTTAAAGATGACTGCTTGAAGATAAATTGTACCGTCGGTGTTGTGGTTTCAACCATAGATTGCTCAAAGTTAAACACAGTACTGGTTCCTGAGTCTGATATCGGAGCACATTTTGGCATGCTATTAGAGAATGAGGAAGGATCAGACATTACATTCTCTGTTTCTGGGGAAAAGTTTCATGCACATAAGCTTGTATTGGCTGCTCGTTCTACTAAATTTGAGACTGAATTTTTCAACAAGATGGAGGAAGATGATCATAAAATCATTGTTGCTGATATGGACCCTAAGGTTTTCCGGGCACTACTTCATTTTATCTATAAAGATACTCTTATAGAAGATGAAGAGCTCTTCATGTCATATTCTTCACTCTCATCAGTATCTGACACATTTGCTGCAAAGTTGTTAGCTGCTGCAGAAAAGTATGGCTTGCCAAGACTTAAATTGTTGTGTGAATCCATACTTTGCAAAGACATTTCTATAAGTTCTGTTGCGTGTATTTTGGCCCTTGCTGATCAATATCATGCCACAGAACTAAAGTCCATTTGTCTAAAGTTTGCTGCTGAGAACCTTGTTGCTGTGATGCAGTCTGATAGTTTCGAGTATCTTAAGGAGAACTGTCCATTGTTGCAATCAGAACTGCTGAAGACAGTGGCAGGGTGCGAAGATGAATCTAGTGGAGAGGGGAAATGTAGTGTGTGGGCCCAGTTTTCTGATGGTTGTGATACAAATGGGGTCGAAAGAAGTCAAAATTTATGGATTCAGCTTTCTGATGGTGCTAACAATAACAATAGGAGTCCAGGTCAAGAAGCTTCATGA 1995 0.4607 MYLSRRIITKASHLRHFSEGAAAVAHQEPLGLLPPFTYLEGFPRPDPRYAETILAIPRSASGSIISAKERKVGRVPSIVFEQEDGQHGGNKRLVSVRTNQIRKLVNHLGRSFFLSRLFDLEVRSEFVSEDIVEKIRVLPRLRIPVNFLWEVNIGAASSHVDSTCSFFGFACILHLHAGSDVPLNVTFIRAPSHALLKVNVPLLFRGEDVSPGLKKGRDNSNRTVISLPRDPFPLWLYDLGHSRLGNMNSPGRSRSILVSPTSSRSVTETVNGSHNFVIKGYSLAKGIGVGKHIASENFSVGGYQWAIYFYPDGKNPEDNSTYVSVFIALASEGTDVRALFELTLVDQSGNGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFKRAQLEVSTFLKDDCLKINCTVGVVVSTIDCSKLNTVLVPESDIGAHFGMLLENEEGSDITFSVSGEKFHAHKLVLAARSTKFETEFFNKMEEDDHKIIVADMDPKVFRALLHFIYKDTLIEDEELFMSYSSLSSVSDTFAAKLLAAAEKYGLPRLKLLCESILCKDISISSVACILALADQYHATELKSICLKFAAENLVAVMQSDSFEYLKENCPLLQSELLKTVAGCEDESSGEGKCSVWAQFSDGCDTNGVERSQNLWIQLSDGANNNNRSPGQEAS 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0549 664 SUPERFAMILY POZ domain 423 549 IPR011333 -
Lele08g0549 664 CDD BACK_AtBPM-like 548 609 IPR034090 -
Lele08g0549 664 SMART BTB_4 441 551 IPR000210 GO:0005515
Lele08g0549 664 CDD MATH 272 405 IPR002083 GO:0005515
Lele08g0549 664 ProSiteProfiles MATH/TRAF domain profile. 271 405 IPR002083 GO:0005515
Lele08g0549 664 ProSiteProfiles BTB domain profile. 441 507 IPR000210 GO:0005515
Lele08g0549 664 Gene3D - 550 619 - -
Lele08g0549 664 CDD Ribosomal_L25_TL5_CTC 52 140 IPR029751 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lele08g0549 664 SMART math_3 276 388 IPR002083 GO:0005515
Lele08g0549 664 FunFam BTB/POZ and MATH domain-containing protein 4 270 409 - -
Lele08g0549 664 Gene3D Potassium Channel Kv1.1; Chain A 417 545 IPR011333 -
Lele08g0549 664 FunFam BTB-POZ and math domain 1 417 545 - -
Lele08g0549 664 Pfam BTB/POZ domain 433 550 IPR000210 GO:0005515
Lele08g0549 664 CDD BTB_POZ_BPM_plant 427 548 - -
Lele08g0549 664 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 270 409 IPR008974 GO:0005515
Lele08g0549 664 SUPERFAMILY TRAF domain-like 268 407 - -
Lele08g0549 664 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 261 607 IPR045005 GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0549 Lele-ChrLele08 3320683 3328237 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lele08g0549 BTB 1.3e-24 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0549 08 3320683 3328237 Lele08g0549 08 3320683 3328237 ECH
Lele06g0545 06 3266186 3267093 Lele08g0549 08 3320683 3328237 hybridization