Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0548 ATGCCGAATATACGAGTTGCCGCCTTGCCGGGACAAAGTCCTCTCTCAAAATGGAAACTTGCAGAAACAACTTATAGGGATTGTAGGGGACTGCCTCTGATGTTGGACTTGGAACCCGTTTCAAAATCCTGTAAGTCCAATGAAGAAGAGGAAGGCGACAAAAGACCTCTACTTCAATGCGCAGAACTCATCCTCCCGTGGCTAACCCCTTTGGGGCTTGCCAATGTCTCTTTGACCAGCAAAGCCTTTTCCCTAATTTCCAAGACCATCATCCTCCGCCGCGTATCTGATTCTTCTAGAGGATTCGAGAATTTGCCTATCCCATTTCGCAACACCGCTGATGATACGCCATACGCTTTCTTCATCTACACTCCTTCCTTAATTCTACCTTCTGATTCACAATTTCTTCGTCAATCTTGGGGTTCGAATTTTGCTGCCACCGGTGACTGTGTTGATAAGCGTGCTATGGAATCGGTGAGTTTAGTTGATGAAGAGGGTCAGAGTATATCAGGATGTGACTGTGACACTTGTGGGGATGTAGGGTATGAAGATGACAGGTGCCCTTGTTCGATCTTGGCTGGGTTGGATGTGACTAACGAGTGCGGACCGACTTGTAAGTGCGGGTTGCAGTGTGGGAATCGGTTGGGTCAGAAGGGCATTTCAGTTCGATTGAACATTGTGAGGGATAGGAGGAAAGGATGGGGCTTGTACGCTGACCAGTTGATACAGAAAGGGCAGTTCGTTTGTGAATATGCAGGTGAACTCTTGACAACCGAGGAAGCGAGGAGGAGACATCGGTGTCATGATGAGCTTTCATCACAAGGGCAGTTTTCTTCTGCTCTTTTGGTAGTGAGGGAGCATCTGCCATCGGGAAGGGCTTGTTTGAGGATGAACATTGATGCCACAAGAATAGGAAATGTTGCACGGTTCATTAATCATTCTTGTGATGGTGGGAATTTAAGCACTAAACTAGTGAGAAGGTCGGGAGCTTTATTTCCTCGACTTTGTTTCTTTGCTTTAGAAGATATAGAAAAGGATGAAGAGCTTACTTTTAGCTATGGAGAAGTCATGACAGGGCCTAGGGGTTTGCCATGTTTTTGTGGTAGCTCTTCTTGCTTTGGAACATTGCCCTCAGAAGACACTTAA 1146 0.4634 MPNIRVAALPGQSPLSKWKLAETTYRDCRGLPLMLDLEPVSKSCKSNEEEEGDKRPLLQCAELILPWLTPLGLANVSLTSKAFSLISKTIILRRVSDSSRGFENLPIPFRNTADDTPYAFFIYTPSLILPSDSQFLRQSWGSNFAATGDCVDKRAMESVSLVDEEGQSISGCDCDTCGDVGYEDDRCPCSILAGLDVTNECGPTCKCGLQCGNRLGQKGISVRLNIVRDRRKGWGLYADQLIQKGQFVCEYAGELLTTEEARRRHRCHDELSSQGQFSSALLVVREHLPSGRACLRMNIDATRIGNVARFINHSCDGGNLSTKLVRRSGALFPRLCFFALEDIEKDEELTFSYGEVMTGPRGLPCFCGSSSCFGTLPSEDT 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0548 381 SUPERFAMILY SET domain 93 367 IPR046341 -
Lele08g0548 381 ProSiteProfiles SET domain profile. 222 354 IPR001214 GO:0005515
Lele08g0548 381 ProSiteProfiles Post-SET domain profile. 361 377 IPR003616 -
Lele08g0548 381 Gene3D SET domain 79 358 IPR046341 -
Lele08g0548 381 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 50 370 - -
Lele08g0548 381 SMART set_7 222 360 IPR001214 GO:0005515
Lele08g0548 381 Pfam SET domain 233 354 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0548 Lele-ChrLele08 3317246 3318882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0548 97 372 EF-hand Containing Proteins AT5G13960 30.363 9.85e-24 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lele08g0548 SET 1.6e-19 No_clan