Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele08g0540 | ATGGACAGGCTCATAAGATTAGATCCATCAAACATCGTTCCCATCAGAGTTGAAGCTGGGCAGAAATGTGTTGGCCATATCACGTTACGCAACGTGATGTACACCATGCCAGTGGCTTTCAGGCTTCAACCGTTGATCAAGACTCGTTACACAGTGAAGCCTCAATCTGGAATTATATCTCCTTTGGCCACACTTACTCTGGAGATCGTCTATCATCTTCCACCTGGAGCTACTCTTCCTCATTCTTATCCTCACTCCGACGATTCTTTCCTTCTTCACAGTGTGGTGGTTCCTGGTGCCGCAATTAAAGAGTCTTCCTCTATGTTTGATTCTGTTCCCAGCGACTGGTTCACCACTAAGAAGAAGCAGGTCTTCATCGACAGTGGCATCAAGATCATGTTCGTGGGTTCGCCGATTCTGTCTCAACTTGTTGCAGATGGTTCCATGGATGATATCAGAGAGGCCCTGGAACGAAGCGACCCGACATGGAAGGCTCCAGACTCCATGGACTCACAAGGTCAGAGTTTACTTCACCAGGCTATTTCACAGAGCAGACCGGATCTTGTTCAGTTACTCCTCGAATTCAAGCCGAATATAGAAGTTCCGAATCGTTCCGGTTCAACCCCACTTGAGGCTGCATCTTCCTCCGGGGAATCCTTAATAGCTGAGCTTCTATTGGCTCACAAGTCTCACACTGAACGATCGGAATCATCCGTTTGGGGGCCGATTCATCATGCTGCTAAAGGAGGACACTTGGAGGTTCTTAGGCTTCTTTTACTGAAAGGAGCTAAAGTAGACTCTAAAGCGAAGGATGGTAGCACGGCTTTGCACCTCGCAGTTGAAGAACGAAGACGAGATTGCGCTAGACTTCTGTTGGCCAATGGTGCCAGAACCGACGTTCGGAACTCCAGAGACGGCGACACACCTTTACATATAGCTGCATCCACCGGCGACGAGAACATGGTCAAGTTATTGTTACAAAAGGGTGCGAATAAGGAAGTGAGAAATGTGTTGGGGAAAACTGCGTACGACATCGCAGCCGAGAATGGATATAACCGTCTATTTGACGCGCTTAAATTAGGGGACCATCTCTGCGTGGCGGCGAGAAAAGGGGAGGTGAGAACCATACAGAGGCTGATCGAGAACGGAGCTTCCATTAATGGGAGAGATCAACACGGATGGACGGCGCTTCACAGAGCCGCGTTCAAAGGACGAACGGATGCGGTTCGGGCTCTTCTAGATAAAGGGGTGGATGTGGATGCTAAGGACGAGGATGGGTACACGGCGCTGCATTGCGCGGCGGAGTCTGGTCATGCCGACGTGACGGAGCTGTTGGTGAAGAAGGGAGGAGATGTTGAAGCGAGGACCAATAAGGGCGTGACCGCGTTGCAAATAGCAGAGTCGCTGCACTATGTGGGGATCACGAGGTTACTCGTCAACGGTGGGGCTAGTAGGGAGAACAACGGTCAGATTCCGGCACCTCCTGCGAATATTCCGTTCGGGAAACAAATGGATGGTGCGGACAAGAAGAAGAAGATAATCAGAAACAGAGGTCTTCGGGGCAGCTTCGATCGCTCGGCAGCTCTAGCTGTGATGTAA | 1599 | 0.5041 | MDRLIRLDPSNIVPIRVEAGQKCVGHITLRNVMYTMPVAFRLQPLIKTRYTVKPQSGIISPLATLTLEIVYHLPPGATLPHSYPHSDDSFLLHSVVVPGAAIKESSSMFDSVPSDWFTTKKKQVFIDSGIKIMFVGSPILSQLVADGSMDDIREALERSDPTWKAPDSMDSQGQSLLHQAISQSRPDLVQLLLEFKPNIEVPNRSGSTPLEAASSSGESLIAELLLAHKSHTERSESSVWGPIHHAAKGGHLEVLRLLLLKGAKVDSKAKDGSTALHLAVEERRRDCARLLLANGARTDVRNSRDGDTPLHIAASTGDENMVKLLLQKGANKEVRNVLGKTAYDIAAENGYNRLFDALKLGDHLCVAARKGEVRTIQRLIENGASINGRDQHGWTALHRAAFKGRTDAVRALLDKGVDVDAKDEDGYTALHCAAESGHADVTELLVKKGGDVEARTNKGVTALQIAESLHYVGITRLLVNGGASRENNGQIPAPPANIPFGKQMDGADKKKKIIRNRGLRGSFDRSAALAVM | 532 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele08g0540 | 532 | ProSiteProfiles | Ankyrin repeat profile. | 392 | 424 | IPR002110 | GO:0005515 | |
| Lele08g0540 | 532 | ProSiteProfiles | Ankyrin repeat region circular profile. | 425 | 457 | - | - | |
| Lele08g0540 | 532 | ProSiteProfiles | Ankyrin repeat profile. | 172 | 204 | IPR002110 | GO:0005515 | |
| Lele08g0540 | 532 | ProSiteProfiles | Ankyrin repeat profile. | 425 | 457 | IPR002110 | GO:0005515 | |
| Lele08g0540 | 532 | SUPERFAMILY | PapD-like | 2 | 150 | IPR008962 | - | |
| Lele08g0540 | 532 | Pfam | Ankyrin repeat | 305 | 333 | IPR002110 | GO:0005515 | |
| Lele08g0540 | 532 | Gene3D | - | 361 | 429 | IPR036770 | - | |
| Lele08g0540 | 532 | ProSiteProfiles | Ankyrin repeat profile. | 242 | 270 | IPR002110 | GO:0005515 | |
| Lele08g0540 | 532 | PANTHER | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED | 98 | 354 | - | - | |
| Lele08g0540 | 532 | SUPERFAMILY | Ankyrin repeat | 168 | 486 | IPR036770 | - | |
| Lele08g0540 | 532 | Pfam | Ankyrin repeats (many copies) | 400 | 446 | IPR002110 | GO:0005515 | |
| Lele08g0540 | 532 | Gene3D | - | 135 | 303 | IPR036770 | - | |
| Lele08g0540 | 532 | ProSiteProfiles | Ankyrin repeat region circular profile. | 242 | 266 | - | - | |
| Lele08g0540 | 532 | SMART | ANK_2a | 205 | 234 | IPR002110 | GO:0005515 | |
| Lele08g0540 | 532 | SMART | ANK_2a | 392 | 421 | IPR002110 | GO:0005515 | |
| Lele08g0540 | 532 | SMART | ANK_2a | 359 | 388 | IPR002110 | GO:0005515 | |
| Lele08g0540 | 532 | SMART | ANK_2a | 172 | 201 | IPR002110 | GO:0005515 | |
| Lele08g0540 | 532 | SMART | ANK_2a | 271 | 300 | IPR002110 | GO:0005515 | |
| Lele08g0540 | 532 | SMART | ANK_2a | 238 | 267 | IPR002110 | GO:0005515 | |
| Lele08g0540 | 532 | SMART | ANK_2a | 305 | 334 | IPR002110 | GO:0005515 | |
| Lele08g0540 | 532 | SMART | ANK_2a | 425 | 454 | IPR002110 | GO:0005515 | |
| Lele08g0540 | 532 | SMART | ANK_2a | 458 | 487 | IPR002110 | GO:0005515 | |
| Lele08g0540 | 532 | Gene3D | - | 430 | 480 | IPR036770 | - | |
| Lele08g0540 | 532 | ProSiteProfiles | Ankyrin repeat region circular profile. | 172 | 204 | - | - | |
| Lele08g0540 | 532 | PRINTS | Ankyrin repeat signature | 408 | 422 | IPR002110 | GO:0005515 | |
| Lele08g0540 | 532 | PRINTS | Ankyrin repeat signature | 306 | 321 | IPR002110 | GO:0005515 | |
| Lele08g0540 | 532 | Pfam | Ankyrin repeats (3 copies) | 241 | 301 | IPR002110 | GO:0005515 | |
| Lele08g0540 | 532 | Pfam | Ankyrin repeats (3 copies) | 162 | 230 | IPR002110 | GO:0005515 | |
| Lele08g0540 | 532 | ProSiteProfiles | Ankyrin repeat profile. | 364 | 391 | IPR002110 | GO:0005515 | |
| Lele08g0540 | 532 | ProSiteProfiles | Ankyrin repeat profile. | 305 | 337 | IPR002110 | GO:0005515 | |
| Lele08g0540 | 532 | ProSiteProfiles | Ankyrin repeat profile. | 271 | 303 | IPR002110 | GO:0005515 | |
| Lele08g0540 | 532 | Gene3D | Immunoglobulins | 1 | 134 | IPR013783 | - | |
| Lele08g0540 | 532 | ProSiteProfiles | Ankyrin repeat region circular profile. | 392 | 424 | - | - | |
| Lele08g0540 | 532 | ProSiteProfiles | Ankyrin repeat region circular profile. | 305 | 336 | - | - | |
| Lele08g0540 | 532 | ProSiteProfiles | Ankyrin repeat region circular profile. | 271 | 302 | - | - | |
| Lele08g0540 | 532 | ProSiteProfiles | Major sperm protein (MSP) domain profile. | 4 | 135 | IPR000535 | - | |
| Lele08g0540 | 532 | Gene3D | - | 304 | 360 | IPR036770 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele08g0540 | Lele-ChrLele08 | 3274833 | 3276431 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele08g0540 | 364 | 483 | Ion Channels | AT4G32500 | 29.801 | 5.15e-08 | 53.9 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele05g0701 | 05 | 4140002 | 4141603 | Lele08g0540 | 08 | 3274833 | 3276431 | hybridization | |
| Lele06g0535 | 06 | 3221779 | 3223377 | Lele08g0540 | 08 | 3274833 | 3276431 | hybridization |