Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0524 ATGGCGCTCCTTCGTGCCTTCACGCTTATCCTTTCAACTCCTTTTGACTTGGCAACATTTGCAGAAGCAAAGGACAATGACTCGGTAGTCGGTACCCTCAACCCTAATCCTGACCTAGCTTCTCGGGTACAAATCCAGTTAAGTAAAACTCTAACAGACAAGACAGGGATGGCGGTCATTTTTGTGGAAGTCAAAGAAGCAATTGAAAGAATAGCCTTCCCCCTATCATCTGAAGATCCCATAAACATTGTCTCTCAATTCCCACTTTCTCAAGCCTCAACAGTAGTGATGGAAATTCAATTCCAGCAGCCAAAGCAGCAACATCAGAGAGCAGGCATTCCAATCAGCAAAGGAGGGAAATTCAAAGGAAGAAACAGAAGCCGCAGCAACCCAAACAAGTTTGTAGGGGTTAGGCAGAGGCCTTCAGGGAGATGGGTAGCTGAGATCAAAGACACAACCCAGAAGATAAGAATGTGGCTTGGCACATTTGAGACTGCAGAGGAGGCTGCCAGAGCCTATGATGAAGCTGCTTGCCTTCTTCGAGGAGCCAACACTCGTACCAACTTCATCACCCATGTCTCCTTGGATTCTCCTCTCGCCTCTCGGATTAGAAATCTGCTCAACAACAGAAAATCAGGAACTAAACAACAACAACAACAACAAAAACAAGATCGTGTGGTAGCAGCCTCTGCCCCTAAAGCCAGAAGCACCAATACTAGCACTACTAGTAGTACTAGTATTAGCAGTAGTTCTAGCAATAATACTGACAACAATGACAGCTCGCTTTCTAGTGGGACAATCCAAGATGCCAATCTGTTTGATGATGCTTATAAACCAGATATGAGCAATTGCAAGGAGGAATTTGGGTTGGGTTCGACGTCCAATCTCTCATGGGGTGGTTTTGGACCGGTTTTTGATCGGTTTTCTTTTGCTCAGGTTTCAGATATTCCTAAGACTGATGGGGGACTGTCTAATATTGCTGACTTGGATCTTTTAGAATTTGAAAGGATGAAAGTTGAGAGGCAAATATCAGCTTCACTCTATGCAATTAATGGAGTGCAAGAGTACATGGAAACTGTTAAGGACTCCAATGAAGCTCTGTGGGATCTTCCACCCTTGTGTTCACTGTTCTGTTAA 1137 0.4442 MALLRAFTLILSTPFDLATFAEAKDNDSVVGTLNPNPDLASRVQIQLSKTLTDKTGMAVIFVEVKEAIERIAFPLSSEDPINIVSQFPLSQASTVVMEIQFQQPKQQHQRAGIPISKGGKFKGRNRSRSNPNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGANTRTNFITHVSLDSPLASRIRNLLNNRKSGTKQQQQQQKQDRVVAASAPKARSTNTSTTSSTSISSSSSNNTDNNDSSLSSGTIQDANLFDDAYKPDMSNCKEEFGLGSTSNLSWGGFGPVFDRFSFAQVSDIPKTDGGLSNIADLDLLEFERMKVERQISASLYAINGVQEYMETVKDSNEALWDLPPLCSLFC 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0524 378 SUPERFAMILY DNA-binding domain 133 190 IPR016177 GO:0003677
Lele08g0524 378 MobiDBLite consensus disorder prediction 107 132 - -
Lele08g0524 378 FunFam ethylene-responsive transcription factor RAP2-11 132 191 - -
Lele08g0524 378 PRINTS Ethylene responsive element binding protein signature 156 172 IPR001471 GO:0003700|GO:0006355
Lele08g0524 378 PRINTS Ethylene responsive element binding protein signature 134 145 IPR001471 GO:0003700|GO:0006355
Lele08g0524 378 ProSiteProfiles AP2/ERF domain profile. 133 190 IPR001471 GO:0003700|GO:0006355
Lele08g0524 378 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 105 343 - -
Lele08g0524 378 SMART rav1_2 133 196 IPR001471 GO:0003700|GO:0006355
Lele08g0524 378 CDD AP2 133 189 IPR001471 GO:0003700|GO:0006355
Lele08g0524 378 Pfam AP2 domain 133 182 IPR001471 GO:0003700|GO:0006355
Lele08g0524 378 MobiDBLite consensus disorder prediction 211 265 - -
Lele08g0524 378 Gene3D AP2/ERF domain 132 191 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0524 Lele-ChrLele08 3180518 3182311 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0524 120 378 AP2-EREBP Transcription Factor Family AT5G19790 40.755 1.77e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele08g0524 AP2 1.1e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1343 13 23375283 23376101 Lele08g0524 08 3180518 3182311 CCT
Lele08g0524 08 3180518 3182311 Lele08g0524 08 3180518 3182311 ECH
Lele05g0689 05 4059039 4061555 Lele08g0524 08 3180518 3182311 hybridization
Lele06g0519 06 3132835 3133764 Lele08g0524 08 3180518 3182311 hybridization