Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0509 ATGGACGTTTGCCGGAATGTATCAGTTTCTGGTGAGGGCAAGCAAGAGCAGGTTCTTCCCCCTTCTTGCTCAAAGCTTTCTTCCTTCTCCACCAGCCTCGATGACCTCTTCTCTGCTCAGAACACGGAGGCGGATGTCGGATTGGAGTGGCTGTCAGTATTTGTGGAAGATTGCTTTTCAAGCCAAGCTAGCTGTCTCTTGGCACCTCCTGATGTTCATCATCAAGCTACAACAACAACCTCCGAACCTTCAAAACCATTGCAGAGACCTCACCAGAATGAGTCTTCTCTGCAAAATTTTGCTGTGCCTGGAAAAGCCAGAAGCAAAAGGAAGAGACTTTCAGCTCCGAGAGCCAAAGACCCCTTAAGCATATGGTCAGATCATTTAAACCCACAAAACGAAGCCATAAGCTCAGACCCTCCTCTGCTCAAACAAGCTTACTGGTTAGCAGACAGTGAACTCATGGTCCCAAACAAGAAAGAGAAGGAAGAAGAAAGCAAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGATGATGATGGTGGTGGTGATGAAGGAGTCGGAGAGTGAGGTCAGCAATGGGCAAAATGTTATGCCAAGGAGGTGCAGTCACTGCTTGGCACAGAGGACCCCACAATGGAGGGCAGGACCATTGGGTCCAAAAACATTATGCAATGCATGTGGGGTGAGGTTCAAGTCTGGCAGGTTGTTGCCAGAGTATAGACCAGCCAAGAGTCCAACTTTTGTGAGCTACCTGCACTCTAATTCCCACAAGAAAGTCATGGAGATGAGGATGTCTCTTATTTCTTCTTCTTCTTCTGATGTAAATCAAACTCAGCAAGTTTAG 873 0.4651 MDVCRNVSVSGEGKQEQVLPPSCSKLSSFSTSLDDLFSAQNTEADVGLEWLSVFVEDCFSSQASCLLAPPDVHHQATTTTSEPSKPLQRPHQNESSLQNFAVPGKARSKRKRLSAPRAKDPLSIWSDHLNPQNEAISSDPPLLKQAYWLADSELMVPNKKEKEEESKEEEEEEEEEEEEEEEEEEKMMMVVVMKESESEVSNGQNVMPRRCSHCLAQRTPQWRAGPLGPKTLCNACGVRFKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMSLISSSSSDVNQTQQV 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0509 290 MobiDBLite consensus disorder prediction 155 185 - -
Lele08g0509 290 ProSiteProfiles GATA-type zinc finger domain profile. 205 241 IPR000679 GO:0006355|GO:0043565
Lele08g0509 290 ProSitePatterns GATA-type zinc finger domain. 211 236 IPR000679 GO:0006355|GO:0043565
Lele08g0509 290 Gene3D - 200 275 IPR013088 GO:0006355|GO:0008270
Lele08g0509 290 PANTHER GATA TRANSCRIPTION FACTOR 26 281 - -
Lele08g0509 290 SMART GATA_3 205 259 IPR000679 GO:0006355|GO:0043565
Lele08g0509 290 MobiDBLite consensus disorder prediction 74 138 - -
Lele08g0509 290 FunFam GATA transcription factor 201 288 - -
Lele08g0509 290 Coils Coil 156 190 - -
Lele08g0509 290 MobiDBLite consensus disorder prediction 1 21 - -
Lele08g0509 290 MobiDBLite consensus disorder prediction 166 185 - -
Lele08g0509 290 MobiDBLite consensus disorder prediction 74 102 - -
Lele08g0509 290 Pfam GATA zinc finger 211 245 IPR000679 GO:0006355|GO:0043565
Lele08g0509 290 CDD ZnF_GATA 210 257 IPR000679 GO:0006355|GO:0043565
Lele08g0509 290 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 207 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0509 Lele-ChrLele08 3098810 3100051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0509 24 273 C2C2-Gata Transcription Factor Family AT4G32890 39.147 1.51e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele08g0509 GATA 7e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0509 08 3098810 3100051 Lele08g0509 08 3098810 3100051 ECH
Lele05g0676 05 3989437 3990697 Lele08g0509 08 3098810 3100051 hybridization