Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0499 ATGCTTGGTCCGATAAAGGCCGCAATTGGAGATGCAGTGCTCACTTTTATGTGGGTCTTCTGCGCATCCACGCTTGGATTAGCCACTAGCGTGATCACAGCATCACTCGGTCTTCAGCATCTATCCTTCAATGGTCTCAATTACGCATCAATTATCGTCACCACCGTTCTTGTCTTTACCCTTGTCTTTATTTTCACCATCATCGGCAATGCCTTGGGTGGTGCTACCTTCAACCCCACCGGCACTGCTGCCTTTTACGCCGTTGGTCTCGGCTCTGACACCCTTTTCTCAATGGCTATCCGTTTTCCTGCTCAGGCGTTAGGTGCTGCGGGTGGTGCTTTGGCAATTATGGAGGTGATGCCGCCGAAATTCAGACACATGATCGGCGGACCTTCGTTGAAGGTTGATTTGCATACTGGAGCTATTGCTGAAGGGGTTCTGACATTTGTGATCACTCTGGCTGTTCTTTTTATCATACTCAGGGGTCCTCGTAGTGAATTGTTGAAAACTTGGTTGCTGGCTATGTCTACCGTGACTCTGGTCATGGCTGGCTCTGCTTACACCGGTCCCTCCATGAATCCTGCCAATGCATTTGGGTGGGCATACGTAAACAACTGGCACAATACATGGGACCAATTCTATGTGTACTGGATTTGCCCCTTCGTTGGTGCCATAGTAGCTGCCTGGGCGTTTCGAATTTTGTGTCCCCCACCAGCACCAGTAGAGAAACAGAAGAAAGCCTGA 744 0.4973 MLGPIKAAIGDAVLTFMWVFCASTLGLATSVITASLGLQHLSFNGLNYASIIVTTVLVFTLVFIFTIIGNALGGATFNPTGTAAFYAVGLGSDTLFSMAIRFPAQALGAAGGALAIMEVMPPKFRHMIGGPSLKVDLHTGAIAEGVLTFVITLAVLFIILRGPRSELLKTWLLAMSTVTLVMAGSAYTGPSMNPANAFGWAYVNNWHNTWDQFYVYWICPFVGAIVAAWAFRILCPPPAPVEKQKKA 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0499 247 SUPERFAMILY Aquaporin-like 5 241 IPR023271 -
Lele08g0499 247 FunFam Aquaporin SIP1-1 2 247 - -
Lele08g0499 247 Pfam Major intrinsic protein 5 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele08g0499 247 Gene3D Glycerol uptake facilitator protein. 4 244 IPR023271 -
Lele08g0499 247 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele08g0499 247 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele08g0499 247 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele08g0499 247 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele08g0499 247 PRINTS Major intrinsic protein family signature 58 82 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele08g0499 247 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele08g0499 247 PANTHER AQUAPORIN SIP1-1 3 247 IPR044222 GO:0015250
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0499 Lele-ChrLele08 3027255 3029763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0499 2 247 Major Intrinsic Protein MIP AT5G18290 54.032 2.52e-83 247
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0499 08 3027255 3029763 Lele08g0499 08 3027255 3029763 ECH
Lele05g0663 05 3914999 3917595 Lele08g0499 08 3027255 3029763 hybridization
Lele06g0490 06 2973168 2973966 Lele08g0499 08 3027255 3029763 hybridization