Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0479 ATGGTTCTTTCAAATGATATTGATCTGTTAAATCCCCCGGCTGAGCTGGAGAAGAGAAAACACAAGCTCAAGCGTCTTGTCCAGTCTCCAAACTCTTTCTTCATGGATGTGAAGTGCCAGGGTTGCTTCAACATAACCACTGTTTTCAGTCACTCTCAGACTGTTGTAGTATGTGGCAACTGCCAAACTGTCTTGTGCCAGCCCACAGGTGGACGGGCCAGGTTAACAGAGGGTTGCTCTTTTAGGAAGAAGGGAGACTAA 261 0.4674 MVLSNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0479 86 ProSitePatterns Ribosomal protein S27e signature. 38 70 IPR000592 GO:0003735|GO:0005840|GO:0006412
Lele08g0479 86 Pfam Ribosomal protein S27 30 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Lele08g0479 86 SUPERFAMILY Zn-binding ribosomal proteins 30 84 IPR011332 GO:0006412
Lele08g0479 86 Gene3D - 5 85 IPR023407 -
Lele08g0479 86 PANTHER 40S RIBOSOMAL PROTEIN S27 1 86 IPR000592 GO:0003735|GO:0005840|GO:0006412
Lele08g0479 86 FunFam 40S ribosomal protein S27 1 86 - -
Lele08g0479 86 Hamap 30S ribosomal protein S27e [rps27e]. 24 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0479 Lele-ChrLele08 2929877 2930844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0479 1 86 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 94.186 3.78e-59 173
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0479 08 2929877 2930844 Lele08g0479 08 2929877 2930844 ECH
Lele05g0645 05 3802984 3803939 Lele08g0479 08 2929877 2930844 hybridization
Lele06g0469 06 2861967 2863090 Lele08g0479 08 2929877 2930844 hybridization