Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0469 ATGTCTCGGCCTCACGCCTCACCATCTGATCGGACCCAAAAGGAAGAAACTGCTTCATCACCTTCTTCCTTTTCGTATCTTATCAGCACCAGTACTGATAATAAAACCTTCTCTGTCCCAATCTCACATGCTCATCAAGTAAGTACCTCTTCTGGGTTGATACAGAAGCAGGAACCATCATCCCAGCCGACAGATCAAAATCAAGGCAACAATAATGTGAGAAGAAGAAACTATAGAGGAGTGAGGCAGAGGCCATGGGGGAAGTGGGCAGCTGAAATCCGAGACCCTAAAAAAGCAGCTAGAGTGTGGCTTGGAACCTTCGAGACGGCCGAGGAGGCTGCCGCTGCTTATGATGCTGCAGCATTAAGGTTCAAAGGAAGCAAAGCTAAGCTTAATTTCCCCGAACGTGTTTCTTTAGCTACTTCTTCAGCCATCCCTTCATCACAAACGTCCCAGATTCAGGCTGCTCATCCAACGCCGCCAACATCGGAGGCGGTACAAACGGTGTCTCAGCCTATAGCGCCATCGATGGACGATGAAGGGTTCCCGAATCTGTTCCAGTACGCGCAGCTGCTTTGTGGCGGTGATGATGACCTGCAAAGAGCTGCTGCTTCGGGACTTTATAGTTTTCATCAGAATAAGCCATTTCTTTATAATTCCTCTCAGTCATTCTCGTCATCATCAGGAGTGTCTTCTTCATCTGCTCCCATGTCTGGGTCTGATCAACAGCAGGTTCAAGATACGCAGAGAGTACAAAAGGGAGATTATGGTTCTTCTTCTCCTGGTTCTTGTTTTTTTTATGAAAGAAACACGAGGGGATAG 822 0.4745 MSRPHASPSDRTQKEETASSPSSFSYLISTSTDNKTFSVPISHAHQVSTSSGLIQKQEPSSQPTDQNQGNNNVRRRNYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAAAAYDAAALRFKGSKAKLNFPERVSLATSSAIPSSQTSQIQAAHPTPPTSEAVQTVSQPIAPSMDDEGFPNLFQYAQLLCGGDDDLQRAAASGLYSFHQNKPFLYNSSQSFSSSSGVSSSSAPMSGSDQQQVQDTQRVQKGDYGSSSPGSCFFYERNTRG 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0469 273 SMART rav1_2 77 140 IPR001471 GO:0003700|GO:0006355
Lele08g0469 273 PRINTS Ethylene responsive element binding protein signature 100 116 IPR001471 GO:0003700|GO:0006355
Lele08g0469 273 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Lele08g0469 273 ProSiteProfiles AP2/ERF domain profile. 77 134 IPR001471 GO:0003700|GO:0006355
Lele08g0469 273 MobiDBLite consensus disorder prediction 39 76 - -
Lele08g0469 273 MobiDBLite consensus disorder prediction 39 81 - -
Lele08g0469 273 CDD AP2 80 135 IPR001471 GO:0003700|GO:0006355
Lele08g0469 273 PANTHER DNA-BINDING DOMAIN 29 235 IPR044808 GO:0003700|GO:0009873
Lele08g0469 273 FunFam Ethylene-responsive transcription factor 2 76 135 - -
Lele08g0469 273 Gene3D AP2/ERF domain 76 136 IPR036955 GO:0003700|GO:0006355
Lele08g0469 273 SUPERFAMILY DNA-binding domain 77 135 IPR016177 GO:0003677
Lele08g0469 273 Pfam AP2 domain 77 126 IPR001471 GO:0003700|GO:0006355
Lele08g0469 273 MobiDBLite consensus disorder prediction 225 273 - -
Lele08g0469 273 MobiDBLite consensus disorder prediction 144 164 - -
Lele08g0469 273 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0469 Lele-ChrLele08 2873322 2874606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0469 57 196 AP2-EREBP Transcription Factor Family AT5G61890 57.042 3.25e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele08g0469 AP2 2.6e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0469 08 2873322 2874606 Lele08g0469 08 2873322 2874606 ECH
Lele07g0667 07 3802791 3804717 Lele08g0469 08 2873322 2874606 ECH
Lele21g1628 21 24240294 24243413 Lele08g0469 08 2873322 2874606 ECH
Lele22g1611 22 21628301 21644118 Lele08g0469 08 2873322 2874606 ECH
Lele23g0383 23 2773051 2774713 Lele08g0469 08 2873322 2874606 ECH
Lele05g0636 05 3743641 3744918 Lele08g0469 08 2873322 2874606 hybridization
Lele06g0456 06 2798782 2800662 Lele08g0469 08 2873322 2874606 hybridization