LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele08g0459	ATGGCGAACAGATACTGGGTAGTCTCTCTCCTCGTTCAAAATTCGGCATCTGCTCTCTGGACTCAATTGCAGGAACAAATCTCCAAGCATTCCTTCGATACTCCTCTTTACAGATTCAATATACCTAATCTCCGGGTTGGAACCCTAGATTCTCTTCTTTCTCTCAGCGATGATCTTGTGAAGGCGAACAGTTTCATGGAAGGAGTGTCACACAAGATCAGGCGACAGATTGAGGAATTGGAGAAAGTTTCGGGCGTTGTGAGCAGCAGTCTGACGGTTGATGGGGTGCCAGTCGATTCATATTTGACCAGGTTTGTTTGGGATGAAGCTAAGTACCCGACTATGTCACCTTTGAAGGAGATTGTGGATGGTATTCACGGTCAAGTGGCAAATATTGAGGATGATCTGAAGGTTCGTGTTGCTGAGTATAACAATATCCGCAGTCAACTAAATGCTATCAACCGAAAGCAAAGTGGAAGCTTAGCTGTCCGTGATCTTTCCAACCTGGTAAAACCTGAGGATATTATAACTTCAGAACATTTAACTACCCTACTTGCAATTGTTCCTAAGTATTCTCAAAAGGACTGGCTCTCAAGCTATGAGACATTGACAAGCTATGTGGTACCCAGGTCTTCCAAGTTGTTGTATGAGGATAATGACTATGCTCTTTATACTGTAACACTCTTCACACGTGTTGCAGACAATTTTAGAACTAGTGCACGTGAAAAAGGGTTCCAAATTCGTGATCTCGAGTACAGTCAAGAAACACATGAAGGTCGGAAGCAGGAGCTAGAGAAGTTGGTACAAGATCAGGAAAGCACAAGAGGAATTCTTTTGCAGTGGTGTTATACCAGTTATGGAGAGGTTTTCAGCTCCTGGATGCACTTTTGTGCTATACGTGTATTTACTGAGAGCATTCTGAGATATGGTTTGCCACCATCTTTCCTGGCAGCGGTCTTAGCTCCGTCTGCAAAAAGTGAGAAAAAAGTACGTTCTATACTTGAAGGCTTGTGTGACAGCGCAAACAGTGCATACTGGAAGACTGAGGATGAAGCTGGGGATGGGGATCGAAGATATGGTACATTTGGTTCAAATTCCATTCATTGTTGGGAGCAGCATTCAGACTTCAAGGAGGGGCTGGTGAATTTTAGTGCAGAGTTTGGGCAGAGGATGATCGTTTGCAATATGGATTGTTATTTCATAAACTTTTCTCGTCTGCGATGTGAAATTCGACAAGTGGACAAGTTCACGCGTTTGGTATGCCCCTTTATTGTATGTTCTGTTAAATTTATGCAATATGGCAATCTTAGGTCGATTTACAACCCTAGCATCCAGCATGAACCACTAAGATGGATTTTTTATTCTGTCTGA	1371	0.4289	MANRYWVVSLLVQNSASALWTQLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLVKANSFMEGVSHKIRRQIEELEKVSGVVSSSLTVDGVPVDSYLTRFVWDEAKYPTMSPLKEIVDGIHGQVANIEDDLKVRVAEYNNIRSQLNAINRKQSGSLAVRDLSNLVKPEDIITSEHLTTLLAIVPKYSQKDWLSSYETLTSYVVPRSSKLLYEDNDYALYTVTLFTRVADNFRTSAREKGFQIRDLEYSQETHEGRKQELEKLVQDQESTRGILLQWCYTSYGEVFSSWMHFCAIRVFTESILRYGLPPSFLAAVLAPSAKSEKKVRSILEGLCDSANSAYWKTEDEAGDGDRRYGTFGSNSIHCWEQHSDFKEGLVNFSAEFGQRMIVCNMDCYFINFSRLRCEIRQVDKFTRLVCPFIVCSVKFMQYGNLRSIYNPSIQHEPLRWIFYSV	456

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele08g0459	456	Gene3D	-	163	251	-	-
	Lele08g0459	456	CDD	V-ATPase_C	5	353	IPR004907	GO:0033180\|GO:0046961\|GO:1902600
	Lele08g0459	456	FunFam	V-type proton ATPase subunit C	163	251	-	-
	Lele08g0459	456	PANTHER	V-TYPE PROTON ATPASE SUBUNIT C	1	356	IPR004907	GO:0033180\|GO:0046961\|GO:1902600
	Lele08g0459	456	Pfam	V-ATPase subunit C	5	349	IPR004907	GO:0033180\|GO:0046961\|GO:1902600
	Lele08g0459	456	Gene3D	Vacuolar atp synthase subunit c; domain 1	18	334	-	-
	Lele08g0459	456	SUPERFAMILY	Vacuolar ATP synthase subunit C	1	353	IPR036132	GO:0015078\|GO:0033180\|GO:1902600
	Lele08g0459	456	Coils	Coil	254	274	-	-
	Lele08g0459	456	Gene3D	-	41	312	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele08g0459	Lele-ChrLele08	2801891	2805831	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele08g0459	1	353	Primary Pumps ATPases(2)	AT1G12840	81.870	0.0	608

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele08g0459	08	2801891	2805831	Lele08g0459	08	2801891	2805831	ECH
	Lele07g0660	07	3773849	3778165	Lele08g0459	08	2801891	2805831	ECH
	Lele05g0629	05	3714865	3718839	Lele08g0459	08	2801891	2805831	hybridization
	Lele06g0445	06	2728089	2732919	Lele08g0459	08	2801891	2805831	hybridization