Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0413 ATGAATACAGTCTTTTGTCCCATTGCTGGTTGTGGAGCACGCTTGATTTCCTTGGAGGAATTCGAGAATCATTATAATGCTCGGCATGCTGCCTCTTGTTCAGGGTGTTCTAGAGTCTACCCGACATCTCGCCTGCTAAGCATACATGTTTCTGAAGTGCATGATTCTTTCTTTCAAGCAAAGGCTGCTCGTGGCTATGATGTGGCAAGTATTCCCAACTTCTATTCATATCTTAGGCAACAGCTTCTCATTGACAAGCGTAAGTTCCCCACTTCATTTGAGTTTTTGAAGAAGGCTGCTCGACCATCAAAGAAACAAAGGCAGAAGATTCAACGGAAACAAGCTACACACAAGGAGAATGATACAAGAACAATGGAAGTGGATAATGCAACCATGGATGGCCTTGTAACGGCAGTCTCTAAATTGAGTACTTCGGACTCAACTCCATCATCTGTTGGCTTCGGTCGCCGGCACACGTGGTTTGACATTTGTCCCTAG 498 0.4478 MNTVFCPIAGCGARLISLEEFENHYNARHAASCSGCSRVYPTSRLLSIHVSEVHDSFFQAKAARGYDVASIPNFYSYLRQQLLIDKRKFPTSFEFLKKAARPSKKQRQKIQRKQATHKENDTRTMEVDNATMDGLVTAVSKLSTSDSTPSSVGFGRRHTWFDICP 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0413 165 MobiDBLite consensus disorder prediction 100 122 - -
Lele08g0413 165 SMART c2h2final6 4 29 IPR013087 -
Lele08g0413 165 SMART c2h2final6 31 54 IPR013087 -
Lele08g0413 165 PANTHER UNCHARACTERIZED 3 159 IPR039258 -
Lele08g0413 165 ProSitePatterns Zinc finger C2H2 type domain signature. 33 54 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0413 Lele-ChrLele08 2533282 2534574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0413 4 158 C2H2 Transcription Factor Family AT5G14140 57.059 6.50e-58 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele08g0413 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0413 08 2533282 2534574 Lele08g0413 08 2533282 2534574 ECH
Lele05g0586 05 3445560 3447593 Lele08g0413 08 2533282 2534574 hybridization
Lele06g0407 06 2484575 2489177 Lele08g0413 08 2533282 2534574 hybridization