LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele08g0398	ATGATCACTATGCTTCTTCTCCACCCGAGAGCTTTGGCCTTTTTGTTGTTGTTGTTGTTCTTCTTCTTTGTCTTTTCGCTTGGAGAAGAGCTGATCAGCTGCAACAAAACATCCCCAGATGTCTCTGGCTACTACCGTTGCAGTAAAAATGAATCACAATGTGGAACATATGCAGTTTTCTTCACCAATTCATACTACTCATCTCTCTTCAACTTGAGCTTTTACTTGGGATTCAATCGTTATGTTATTGCAGATGCAAATGGGTTTTCTGCAGAAACAGAGTTTCTTCTTCATGAACAACCTTTACTAATACCAATAGACTGCAAATGCAAAGGAGGCTTCTTTGGCGCTGAAATAACCAAAACTACCATTAAAGGTGAGAGCTTTTCTGGTATTGCTCAATCGCTTGAAGGTTTGACAACTTGCATGGCTATTAGTGACAAGAATCCAGGTTTGTCACCTTGGAATCTCGATGATGACATCAGATTGTTGATCCCTTTGAGATGTGCATGTCCCTTATCATCATCTCAAGTTTCTCCAGAGCCGAAGCTTCTGATTTCTTACCCTGTGACAGAAGGCGACACAGTTCACAATTTGGCATCGAAGTTTAATACAACCGCCGAAGCAATAATCTCCGCAAATAACATATTTTCCAGAGATTTTAAACCTGAAGCGAAGCTCACACCCTTTACCTCTCTTCTGATTCCAGTCAATGTTAAGCCTGTTCTTGGTTCTCTGGCTAAACCCAAGGAACCCAATTCTGGAAATCAATCAAGCAGCAATATTACAGTAATTAAACCGTCACACAGGAAGCCCAAGACGTTGAAGGCTGAATTGTACATTGGCTTAGCTGGGGTCGCAGTTGGACTTTTGTTTGCTTTCCTGGTAGCTTTTGTTGTGGTTCGATTGAGGAACGAGAAGAAAGAGAAATCATTCAAAAGGAACAATTTGGAGCTGCAACATCTTAATATAAGCGTAAGAACCACCAGCGACAAGAAAGTTTCGTTCGATGGATCCCAGTATGGGAAAATGGTTGACACAACTCCTCGTAAGATGATGCTGGAGACATACATCATTGAAGACCTGAGAAAAGCAACGGAGGATTTCAGTTCTAGCAATCTCATAGAAGGATCTGTATTTCAGGGCCATCTAGAAGGGAAGAGCATGGCGATCAAACAAACACACACAGAAACGGTGTTAAAAATCGATCTTGGGCTCTTCCATAACACAATCCACCATCACCCCAACATTCTTCGAATGCTTGGAACGTGTTTGACAGAAGATCCCCAGTCATATCTGGTTTTCGAGTATGCAAAGAACGGGTCTTTGAAAGACTGGCTTCATGGTGGATTGGCCATAAAGAACGAGTTCATATCATCCTGCTATTGCTTCCTCACATGGAGTCAGAGACTCAGGATCTGCCTCGACGTGGCCATGGCCCTGCAATATATGCACCACGTCATGAACCCAAGCTATGTCCATAGAAATATAAAGAGCAGAAACATCTTTCTAGACGAAGAATTTGGAGCCAAGATAAGCAACTTTGGGATGGCAGGTTGTGTTGAGAACGAAACAGAGGATCAAAACTTCTGCTCAACCAACCCTGCATCTTGGAGTCTTGGCTATTTAGCACCAGAATATGTACAACAAGGTGTGATTTCTCCAAGTACTGATATTTTTGCTTATGGGGTGATTTTGCTGGAAGTTTTGTCTGGTCAGACCCCGATAAGCAGACCCAATGAGAAGGGAGAAGAAGGAAGTGTTTGTCTCAGTGATAAAATAAAGTCAGTTTTGAAGTCAGAAAATGAGGAAGAACTGAGAGGGTGGATGGACAAGGCATTAGGTGGGAGTTATTCATTGGATGAAGCAGAAGCAGTGGCGAATATTGCGAGAGCTTGTGTGGAGGAAGATTATGGTATGAGGCCAAGTGCAGGGGAAATTGTGGAGAAGCTAACAAGATTGGTGGAGGAACTTCCAGAAGAAGAACACGTGTTGATGTCTGAAAGCTCTTCCAAGCCTCTGGTGAAAGCACTGGCAAAACCCTGA	2046	0.4282	MITMLLLHPRALAFLLLLLFFFFVFSLGEELISCNKTSPDVSGYYRCSKNESQCGTYAVFFTNSYYSSLFNLSFYLGFNRYVIADANGFSAETEFLLHEQPLLIPIDCKCKGGFFGAEITKTTIKGESFSGIAQSLEGLTTCMAISDKNPGLSPWNLDDDIRLLIPLRCACPLSSSQVSPEPKLLISYPVTEGDTVHNLASKFNTTAEAIISANNIFSRDFKPEAKLTPFTSLLIPVNVKPVLGSLAKPKEPNSGNQSSSNITVIKPSHRKPKTLKAELYIGLAGVAVGLLFAFLVAFVVVRLRNEKKEKSFKRNNLELQHLNISVRTTSDKKVSFDGSQYGKMVDTTPRKMMLETYIIEDLRKATEDFSSSNLIEGSVFQGHLEGKSMAIKQTHTETVLKIDLGLFHNTIHHHPNILRMLGTCLTEDPQSYLVFEYAKNGSLKDWLHGGLAIKNEFISSCYCFLTWSQRLRICLDVAMALQYMHHVMNPSYVHRNIKSRNIFLDEEFGAKISNFGMAGCVENETEDQNFCSTNPASWSLGYLAPEYVQQGVISPSTDIFAYGVILLEVLSGQTPISRPNEKGEEGSVCLSDKIKSVLKSENEEELRGWMDKALGGSYSLDEAEAVANIARACVEEDYGMRPSAGEIVEKLTRLVEELPEEEHVLMSESSSKPLVKALAKP	681

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele08g0398	681	Coils	Coil	300	320	-	-
	Lele08g0398	681	MobiDBLite	consensus disorder prediction	250	267	-	-
	Lele08g0398	681	Pfam	Protein kinase domain	377	649	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele08g0398	681	ProSiteProfiles	Protein kinase domain profile.	330	666	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele08g0398	681	SUPERFAMILY	Protein kinase-like (PK-like)	345	651	IPR011009	-
	Lele08g0398	681	Gene3D	Transferase(Phosphotransferase) domain 1	438	672	-	-
	Lele08g0398	681	Pfam	LysM domain	188	236	IPR018392	-
	Lele08g0398	681	ProSiteProfiles	LysM domain profile.	186	235	IPR018392	-
	Lele08g0398	681	PANTHER	LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED	19	658	-	-
	Lele08g0398	681	CDD	LysM	186	220	IPR018392	-
	Lele08g0398	681	SUPERFAMILY	LysM domain	186	223	IPR036779	-
	Lele08g0398	681	FunFam	PTI1-like tyrosine-protein kinase 3	438	664	-	-
	Lele08g0398	681	MobiDBLite	consensus disorder prediction	246	267	-	-
	Lele08g0398	681	Gene3D	LysM domain	173	242	IPR036779	-
	Lele08g0398	681	Gene3D	Phosphorylase Kinase; domain 1	342	437	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele08g0398	Lele-ChrLele08	2447684	2449729	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele08g0398	45	676	LysM Receptor-like Kinase (LYKs) Gene Family	AT3G01840	40.030	8.01e-155	461

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Lele08g0398		Pkinase	5.8e-32	CL0016