Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0377 ATGGTGAGCGAAGAACAAAGACGTAGCCAGCAGAACCGAAATAAACCCTCAACAGGAGGTATCTTCAGCCCCGGATTCAAATCTGCGGCTGCTTTGGCTGGTTGGGATGAGGAGGCCCTGCTAATCGCCAGCCTCGTCGTCGAAGACACCCCCGATAGAGCTTCGAAGCACCATAAACACTTTGATCTTAACATCAAGACTCCACCCACCAATTCAAGAAGGAAACGCAGAGCCCAGAGGAGTCCACTTTCAATCCCGGTTACGGTTCTTGACCTTGACGAAGACGAGACTCCCAGAAAGGATAATGTGAAGAAGAAGAAAGAAAACAGAACTGGTGCTAACGAAGGGAGAGGGAATGTTTTGACCCAGCAGACCCCTGGTTCTTCTTCTTCTTCGGGATCTGCTCTTCCCTGCATTATTAAACTCAGGGAGGAGCTTTCCTGCGCTATTTGTTTGGAGATATGCTTTGAACCAAGTACTACTCCTTGTGGACACAGCTTTTGTAGAAAATGCATTCGATCTGCAGCGGATAAATGTGGAAGAAGGTGCCCAAAGTGTAGACAACTGATTAGTAATGGACGATCTTGCACCGTGAACACAGTTCTTTGGAATACAATACAGCTCATTTTTCCCAAGGAAGTGGAAGCAAGGAAAGCAACAGGCGCATTGAATATACGAGAAGCTCAGCAGCGCACAAGTCCAGAAACAGCATTCTATAATAACCTAAGGAGTCGAAGCACGCCCATATTCGAGGCACCAAGCAGAGGTACAACAAGTTGGAGGAGAAGAGTGATCACGACAACCCAAGATGTGGATGAAGATGCTGCATTGGCAAGATGGTTGCAGGGGGAGGAAAATGGAGCGGTTCAGAATAATAATTCAAGGACTCAGACCCCATCGTCGTCGTCGTCTTCAAGAGGGAGGTCAAGAAGAAGGATAACGAGCCAAGACGAGGATGCTGCTCTGGCTCTGAGGTTGCAGAGGGAAGAGTTTATGCAGGCTTTTAGGGGAAGCAAAGTACATTCTGACACAAGTGGGTCAACAATGTCTTCAGCTAGAGAAAATTTGAAGGCCATGGCATCCAGAGCCATCGATCTTCGAATCAGAGACCGAAGATTATAA 1122 0.475 MVSEEQRRSQQNRNKPSTGGIFSPGFKSAAALAGWDEEALLIASLVVEDTPDRASKHHKHFDLNIKTPPTNSRRKRRAQRSPLSIPVTVLDLDEDETPRKDNVKKKKENRTGANEGRGNVLTQQTPGSSSSSGSALPCIIKLREELSCAICLEICFEPSTTPCGHSFCRKCIRSAADKCGRRCPKCRQLISNGRSCTVNTVLWNTIQLIFPKEVEARKATGALNIREAQQRTSPETAFYNNLRSRSTPIFEAPSRGTTSWRRRVITTTQDVDEDAALARWLQGEENGAVQNNNSRTQTPSSSSSSRGRSRRRITSQDEDAALALRLQREEFMQAFRGSKVHSDTSGSTMSSARENLKAMASRAIDLRIRDRRL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0377 373 MobiDBLite consensus disorder prediction 54 133 - -
Lele08g0377 373 SUPERFAMILY RING/U-box 142 211 - -
Lele08g0377 373 ProSitePatterns Zinc finger RING-type signature. 163 172 IPR017907 -
Lele08g0377 373 MobiDBLite consensus disorder prediction 284 316 - -
Lele08g0377 373 SMART ring_2 148 186 IPR001841 -
Lele08g0377 373 MobiDBLite consensus disorder prediction 115 133 - -
Lele08g0377 373 MobiDBLite consensus disorder prediction 92 113 - -
Lele08g0377 373 MobiDBLite consensus disorder prediction 1 24 - -
Lele08g0377 373 PANTHER UNCHARACTERIZED 313 364 - -
Lele08g0377 373 ProSiteProfiles Zinc finger RING-type profile. 148 187 IPR001841 -
Lele08g0377 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 217 IPR013083 -
Lele08g0377 373 MobiDBLite consensus disorder prediction 285 309 - -
Lele08g0377 373 Coils Coil 363 373 - -
Lele08g0377 373 Pfam Zinc finger, C3HC4 type (RING finger) 148 186 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0377 Lele-ChrLele08 2319335 2320948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0377 141 238 C2H2 Transcription Factor Family AT5G39550 36.893 7.59e-06 45.8