Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0376 ATGAGCCACGTACGACTTCTGTTTCCAAATATGGGAAGGCAGCCTTGTTGTGATAAGATCGGCCTGAAACGAGGCCCTTGGACTATTGAGGAAGATCACAAGCTCATCAACTTCATTCTCAACAACGGCATCCATTGTTGGCGCATGGTTCCCAAGCTTGCAGGTCTTCTGAGATGTGGGAAGAGCTGCAGATTGAGATGGATCAATTATCTGAGGCCTGACCTCAAGAGAGGTGGCTTCACTGAAACGGAAGAGGATCAAATTATTCAGCTACATTCACGTCTTGGTAACAGATGGTCTAAGATTGCTGCACATTTTCCTGGGAGAACAGACAATGAGATCAAGAACCATTGGAACACGAGGATCAAGAAGAAGATGAAGCTCATGGGTCTGGATCCTGTGACACACATGCAGATTCAGCAAGTGCAAAAGGAAGTAGTCACTGATAGTAAGAAACAGATCAGAAACCAGTCAAGGCCGAGTTCTGAAGAAAATGTGGAGATGATAATGAAGTCCTCCTCCAACGGAAGCGTCTGCACTCAGGTTCTTTCAGAAGAACAAGGAAAGAACAAGGAAGAATTAAACAAGGTAACAACTTGGGATGATACCTATGATCTTCCGAACACAAACGACAAAGTATGCTCCGACGACTTGGACTTGGGATCATGGATGATGAACCAAGAGAAAAACACCAGTACAAGCTCTTCATCTTTTTCTCTGGACGATTCTGGCCACCTTTCCATGAGTGAATCGTCTTATCTGCAGGAAAACTCTTTAATGGAATGGGTTGATAGTATTAGTATGGAATCCATTCTGCAATGGGATGGCTTCGATCCTCTGGATCAGGATCTTAATTTCTACCTTGGAAATAGATAA 876 0.4384 MSHVRLLFPNMGRQPCCDKIGLKRGPWTIEEDHKLINFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTETEEDQIIQLHSRLGNRWSKIAAHFPGRTDNEIKNHWNTRIKKKMKLMGLDPVTHMQIQQVQKEVVTDSKKQIRNQSRPSSEENVEMIMKSSSNGSVCTQVLSEEQGKNKEELNKVTTWDDTYDLPNTNDKVCSDDLDLGSWMMNQEKNTSTSSSSFSLDDSGHLSMSESSYLQENSLMEWVDSISMESILQWDGFDPLDQDLNFYLGNR 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0376 291 SMART sant 23 73 IPR001005 -
Lele08g0376 291 SMART sant 76 124 IPR001005 -
Lele08g0376 291 Pfam Myb-like DNA-binding domain 77 120 IPR001005 -
Lele08g0376 291 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Lele08g0376 291 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Lele08g0376 291 FunFam MYB transcription factor 78 139 - -
Lele08g0376 291 CDD SANT 26 71 IPR001005 -
Lele08g0376 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 126 IPR017930 -
Lele08g0376 291 Gene3D - 79 126 - -
Lele08g0376 291 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Lele08g0376 291 FunFam MYB transcription factor 21 77 - -
Lele08g0376 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 71 IPR017930 -
Lele08g0376 291 SUPERFAMILY Homeodomain-like 21 118 IPR009057 -
Lele08g0376 291 Gene3D - 21 77 - -
Lele08g0376 291 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 11 225 - -
Lele08g0376 291 CDD SANT 80 120 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0376 Lele-ChrLele08 2312823 2314165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0376 11 187 MYB Transcription Factor Family AT1G66230 61.582 6.66e-75 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele08g0376 Myb_DNA-binding 2e-11 CL0123