Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0345 ATGGCCTCTGCAAGAGTGTTCTATCATGTGCTTCCATGTACGAAATTCATATCCTTCAACAAAGCAGAAGCTTTCTCTCTATCACCCTCCCTACGAACCTATTCCACCACTCCAACCCCATACCCACTTCAGTACGAGATGATTATCAACCGTCCAGTCAATTCTGTGCATGCCCATTCTCGCCGTCGACCTGTTCGACAAAATGACTCTAATGCAGAGGGCTTCCCTGACTCCGAGTCTCCGGACGAGCCCGTTTCTCCGGAAGAGTCCTTCCCAAAATTGGAGCTTGACAAGGCTAAGAAAAAGTATTACAAAAAACGGAAGAAAAGGATGTATGGGTCGGACTCTGATGAAGAAAATAGACGACCTGAAGAGAAGTTTGTGGAACTAAAGCCTGAGGTGGTAGAGCTTCCTACATTGCATAAGAGGGAGGAGGAATTGTATTTCTACGATACGTTTTCTTACCCGTGGGAAAAGGAGAAGCATTATAAGATGGTCTATCAGTTGGAGAAGAAATATTTTCCTGATCAGTGTCTTGATAAAGCGTTCCTACAGCCGGGAGAATCAAATGCAAACGTGAATGTGAATACGGATACAAAGGCTAAGAGCAAGGTGAGGGAAAAGAAGAAAGGCAGGGAAGATATAAGGGAGAAAAAAGATGAGGTTAGTGATGAAAGAAATGATAAGAAGTTGATGTTCTTCGAGGAGAAACAAGAGAAAGAAAAAAAGGATAATAGAGGATTGGTTAATGATAAGAAGTTGATGTTCTTCGAGGAGAAACAAGAGGAAGAAAAAAAGGATAATAGAGGATTGGTTAAGGAAACAAGAGGAGATCTAACCGAAAAGAAGGTCGAAGAGTTCTTTAAATATTTGAAGAAAATTCCGAATAAGGATGTTGAAGTGGGTAATGCTGAGCCGTTTCTTGCGTCAAGGAATTCTGGGCTTCCTCTTAGATGGGATAGTCCTCATGGAACCGTTGTTTTGGTGAATAAACCCAAAGGTTGGACTTCATTTACAGTTTGTGGTAAGCTGCGTCGCTTAGTCAAAGTGAAAAAGGTTGGTCATGCTGGAACTCTTGATCCAATGGCTACGGGTTTATTGATTGTTTGTGTTGGTAATGCAACAAAACTGGTGGAGAGGATTATTTCTTTCGAGTTACTTGGACTTTTCTACTACAGATATCAAGGGATGTTTGAGGGCTATAGTGGGATTTTCCGCCTAGGGGAGGCTACTTCAACGTGGGATGCTGATTCACCGGTCATTCAGCGCGAGCCATGGGAGCACATCAAAGATGAGGACATAAAGAGAACTGCGGCATCCTTTTCTGGGGAGATTTGGCAAGTTCCCCCAATGTTCTCTGCCATTAAAGTTGGAGGTGAGAAAATGTACGAGAAAGCAAATGGAGGAGAAAGCATTGAACTTTCACCTAGACGAATATCAATCTTCCAGTTTGACATAGAGCGTAGTTTGGATGATAGACAAAATTTGATTTTTAGGGTAACCTGTTCCAAAGGAACATATATTCGGTCACTATGTGCAGATTTTGGGAAAGCTCTTGGCAGTTATGCCCATTTAACCGCTCTCCGGAGAGATTCAATTGGAGAATATTCAGCAGATGATGCATGGGACTTTGCGGAGCTGGAAGAGGCTATTTCCAAAAGCTATTTCTAA 1671 0.4243 MASARVFYHVLPCTKFISFNKAEAFSLSPSLRTYSTTPTPYPLQYEMIINRPVNSVHAHSRRRPVRQNDSNAEGFPDSESPDEPVSPEESFPKLELDKAKKKYYKKRKKRMYGSDSDEENRRPEEKFVELKPEVVELPTLHKREEELYFYDTFSYPWEKEKHYKMVYQLEKKYFPDQCLDKAFLQPGESNANVNVNTDTKAKSKVREKKKGREDIREKKDEVSDERNDKKLMFFEEKQEKEKKDNRGLVNDKKLMFFEEKQEEEKKDNRGLVKETRGDLTEKKVEEFFKYLKKIPNKDVEVGNAEPFLASRNSGLPLRWDSPHGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGNATKLVERIISFELLGLFYYRYQGMFEGYSGIFRLGEATSTWDADSPVIQREPWEHIKDEDIKRTAASFSGEIWQVPPMFSAIKVGGEKMYEKANGGESIELSPRRISIFQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSYAHLTALRRDSIGEYSADDAWDFAELEEAISKSYF 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0345 556 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 172 554 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lele08g0345 556 CDD PseudoU_synth_EcTruB 326 550 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lele08g0345 556 Pfam tRNA pseudouridylate synthase B C-terminal domain 509 552 IPR032819 -
Lele08g0345 556 Hamap tRNA pseudouridine synthase B [truB]. 323 556 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lele08g0345 556 TIGRFAM TruB: tRNA pseudouridine(55) synthase 325 547 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lele08g0345 556 MobiDBLite consensus disorder prediction 56 91 - -
Lele08g0345 556 MobiDBLite consensus disorder prediction 188 221 - -
Lele08g0345 556 Pfam TruB family pseudouridylate synthase (N terminal domain) 345 508 IPR002501 GO:0006396
Lele08g0345 556 Gene3D Pseudouridine synthase 319 555 - -
Lele08g0345 556 MobiDBLite consensus disorder prediction 200 221 - -
Lele08g0345 556 FunFam tRNA pseudouridine synthase B 320 555 - -
Lele08g0345 556 SUPERFAMILY Pseudouridine synthase 325 550 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0345 Lele-ChrLele08 2167890 2171555 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0345 326 530 NAC Transcription Factor Family AT3G57150 29.952 1.90e-17 83.6