Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0335 ATGGAATCACCCATTAACGAACCTGCTGTTGACGGAGAAACAAACGATGCGAGGTCCTTAGGCCACAGAGAAGAGGAGGAGGATAAGTCTCAACCTCTAACCGGCGATGGGGCAAGTCCGGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACAATTGCTCAATTTGTCAAGCACTTTGGTAAATATGGCGAGATTACGGATTCTGTGATAATGAAGGACCGGAAGACTGGGCAACCGCGAGGGTTCGGTTTTATAACTTATGCGGATCCCTCTGTAGTTGATAAGGTCATCGAGGATACTCATGTCATAAATGGCAAACAAGTGGAAATTAAACGTACAATACCAAGAGGAGCTGTTGGCTCTAAGGATTTCAGGACAAAGAAAATTTTTGTGGGTGGAATTCCCTCAACCGTGACTGAAGATGAGTTTAGAGACTTCTTTACTCACTATGGAGAGGTCAAAGATCACCAAATAATGCGAGATCATTCCACCAATCGTTCTCGTGGCTTTGGGTTTATTACTTTTGACTCTGAGGAAGCTGTTGAAGATCTCCTCTCTAAGGGAAACAAAATAGAGTTTGTTGGGGCTCAGGTGGAAATAAAAAAGGCTGAGCCAAAGAAATCAAATCCACCACCTGCCTCCTCCAAGCGCTATAATGATTCAAGATCTTCATTTGGTGGTGGGTATGGAGATGCTTATGATGGATTTGGCAGTGGCTTTGGTGTTGGGGGATATAGGTCAGGTGGTGTCTATGGTGGTAGGGGTGGTCCCTATGGTGGCTATGGTGGTGAATTTGGTGGGTATGGAGGATATGCTGGGGCCATGGGGACTTATAGAGATCCCTCTCTTGGGTACTCTGGTCGATATGGAGGTGGGTTTAACAGAGGTTATGACCTTGGAGGATATGGTGGACCTAGTGAGAGTTATGGAGGATACGATGGTGTTGGTTCTTCAGGTGGTGCCTATGGAAGCGGGTATGACGCCAGCTTGGGGGGTGGATACGGCAGCAGTGGTGGTAGTGGCGCTGGAGGTTCCTTTTATGGGAGTAGAGGTGGATATGGAGGTGCGGGATCTGGTCGATACCATCCTTATGGAAGATAG 1107 0.4697 MESPINEPAVDGETNDARSLGHREEEEDKSQPLTGDGASPGKIFIGGLARETTIAQFVKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSTVTEDEFRDFFTHYGEVKDHQIMRDHSTNRSRGFGFITFDSEEAVEDLLSKGNKIEFVGAQVEIKKAEPKKSNPPPASSKRYNDSRSSFGGGYGDAYDGFGSGFGVGGYRSGGVYGGRGGPYGGYGGEFGGYGGYAGAMGTYRDPSLGYSGRYGGGFNRGYDLGGYGGPSESYGGYDGVGSSGGAYGSGYDASLGGGYGSSGGSGAGGSFYGSRGGYGGAGSGRYHPYGR 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0335 368 MobiDBLite consensus disorder prediction 1 40 - -
Lele08g0335 368 FunFam Heterogeneous nuclear ribonucleoprotein 1 40 121 - -
Lele08g0335 368 FunFam Heterogeneous nuclear ribonucleoprotein 1 122 242 - -
Lele08g0335 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 197 IPR000504 GO:0003723
Lele08g0335 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 110 IPR000504 GO:0003723
Lele08g0335 368 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 23 368 - -
Lele08g0335 368 MobiDBLite consensus disorder prediction 16 32 - -
Lele08g0335 368 MobiDBLite consensus disorder prediction 204 223 - -
Lele08g0335 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 207 IPR000504 GO:0003723
Lele08g0335 368 Gene3D - 129 212 IPR012677 -
Lele08g0335 368 SUPERFAMILY RNA-binding domain, RBD 38 119 IPR035979 GO:0003676
Lele08g0335 368 SMART rrm1_1 42 113 IPR000504 GO:0003723
Lele08g0335 368 SMART rrm1_1 130 203 IPR000504 GO:0003723
Lele08g0335 368 SUPERFAMILY RNA-binding domain, RBD 118 215 IPR035979 GO:0003676
Lele08g0335 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 117 IPR000504 GO:0003723
Lele08g0335 368 Gene3D - 41 120 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0335 Lele-ChrLele08 2102224 2105354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0335 41 195 Eukaryotic Initiation Factors Gene Family AT1G71770 27.879 4.76e-11 62.4