Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0331 ATGTCCGCGAAGCCTTGCTCCCATTTCCCGCGGAACAAACTTGGCCTTTCTTTCATTTACGGAGCGAATAGCGTTACTTGCAAAACCAAAAGCCGATTTTTATTTTCCTTTACAAGCTTGCAAAATGCTAATTCGAGGTGCTATAAGAGGTTTCAATGTAGGAATTTGAAACCTTCTTGCCAATTCTTTGTTTCAGAGAATGATAAGTACAGCAACGTCGGTTCTGGGTTACGGAATGCGTTTTCCTTTGTCCGGTCCATTTCACCTGGTGGTAGCTGGTGGAACTTATCTGAACATAAGCAAGACGATGTTAAAGCGGCGAAGCCAATGACGGCGTTGCTCGCTCTTCGCCGAATGTGGGTTTTAATTTCCGGCGAGAGATGGGTTTTATTTATGGCTTTTGGTTCCCTTGTCATTGCTGCCGTTTCAGAGATCTCCATGCCAAGTATATTGGCTGCGTCAATATTTTCAGCACAGAGTGGTGAGGTCGTGGGTTCTACAGGAAGGCACAGTCATTACTTGTTCTGTGTTTCACTTCAGGCATATGCAGGATTCAGGGATTTGGTACCATCTGATGCTGTGATCATCATTTTGCAGGACGTATCCTATTTTGATAGAGAGCAGGTTGGTGACTTAACAAGCAGGCTTTCCGCAGATTGTCAACGACTATCTTATGTCATAGGACATGATCTTCATTTGATATTTCGCAACACTTTACAGGGAACAGGGGCAATAATTAATTTGCTGAGTTTATCATGGCCTCTGGCATTGTCTGCCTTGGTGATTTGCTCTGTTTTATCTTCAATTTTCCTGGTTTATGGCCAGTATCAAAGAAAAGCAGCAAAGTTGACCCAAGATTTCACAGCTAGTGCCAATAAAGTAGCACAGGAAACCCTCTCCCTGGTAAGAACAGTCCGAGCCTATGGCACTGAAGTAGAAGAAACTGGAAGGTACAAACAATGGCTTCAGAGATTAGCATTTGTAAACACTCGAGAGAGTTTGGCTTATGGTTTTTGGAATCTGAGTTTTAACGCCCTTTATCGTTCAACTCAGGTATTTGCTATACTGTTAGGAGGGATGTCTGTTCTCTGTTGTTGTGTAACTGCAGAGCAGCTTACTAAGTATGTACTATACTGAGTGAAGTTGCAGAGGTTAAGGGGACGTATTGAGTTTGTAAATGTATCGTTTTGTTATCCTACAAGGATCAAGGTGCCTATTCTAGAACGCTTAAACTTTTGTGTAGAACCAAATGAAATGATTGCAATAGTTGGACTTAGTGGTAGCGGAAAGAGCACATTACTCAACCTTTTACTTCGTTTATATGAGCCAAGTAATGGTCAGATTTACATTGATGGGTTCCCTCTCGGAGAATTGGATATCAGGTGGCTGAGACAAAACATTGGATATATAGCACAGGAACCGCATCTCTTTCACATGGACATCAAGTCAAACATAAAATATGGTTGCCCTAGATACATTAAACGGGAAGATATTGAACGAGCAGCAAAACAGGCCTATGCTCATGACTTCATTTCATCGTTTCCCAACGGCTATGAAACCATTGTAGATGATAACTCTCTCAGCGGGGGACAAAAGCAACGAATTGCCATTGCTAGGGCCATTCTTAGGGACCCCGTTATTATGATACTTGATGAGGCAACGAGTGCTCTAGATTCTGAGAGTGAGCATTATATCAAGGAGGCTGTATATTCATTAAGAGGTGGAACTAAAGCAAGAACCATCATTACCATAGCGCATAGGCTTTCTACCCTAAAAGCTGCTGACAGTATCTTCGTAATGGACGATGGTCGCATCATTGAGATGGGTAACCACGAAGAACTTCTCCTTAAAGATGGGCTCTACGCAAAGTTGTATAAAGTTCAAACAGATATTTTGACTTGA 1902 0.4217 MSAKPCSHFPRNKLGLSFIYGANSVTCKTKSRFLFSFTSLQNANSRCYKRFQCRNLKPSCQFFVSENDKYSNVGSGLRNAFSFVRSISPGGSWWNLSEHKQDDVKAAKPMTALLALRRMWVLISGERWVLFMAFGSLVIAAVSEISMPSILAASIFSAQSGEVVGSTGRHSHYLFCVSLQAYAGFRDLVPSDAVIIILQDVSYFDREQVGDLTSRLSADCQRLSYVIGHDLHLIFRNTLQGTGAIINLLSLSWPLALSALVICSVLSSIFLVYGQYQRKAAKLTQDFTASANKVAQETLSLVRTVRAYGTEVEETGRYKQWLQRLAFVNTRESLAYGFWNLSFNALYRSTQVFAILLGGMSVLCCCVTAEQLTKYVLYXVKLQRLRGRIEFVNVSFCYPTRIKVPILERLNFCVEPNEMIAIVGLSGSGKSTLLNLLLRLYEPSNGQIYIDGFPLGELDIRWLRQNIGYIAQEPHLFHMDIKSNIKYGCPRYIKREDIERAAKQAYAHDFISSFPNGYETIVDDNSLSGGQKQRIAIARAILRDPVIMILDEATSALDSESEHYIKEAVYSLRGGTKARTIITIAHRLSTLKAADSIFVMDDGRIIEMGNHEELLLKDGLYAKLYKVQTDILT 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0331 633 ProSitePatterns ABC transporters family signature. 527 541 IPR017871 GO:0005524|GO:0016887
Lele08g0331 633 Pfam ABC transporter transmembrane region 196 362 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele08g0331 633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 382 628 IPR027417 -
Lele08g0331 633 FunFam Multidrug ABC transporter ATP-binding protein 381 631 - -
Lele08g0331 633 Pfam ABC transporter 407 555 IPR003439 GO:0005524
Lele08g0331 633 SUPERFAMILY ABC transporter transmembrane region 117 539 IPR036640 GO:0005524|GO:0016020
Lele08g0331 633 Gene3D - 384 631 IPR027417 -
Lele08g0331 633 Gene3D ABC transporter type 1, transmembrane domain 111 383 IPR036640 GO:0005524|GO:0016020
Lele08g0331 633 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 199 363 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele08g0331 633 PANTHER ABC TRANSPORTER B FAMILY 381 626 - -
Lele08g0331 633 SMART AAA_5 416 604 IPR003593 -
Lele08g0331 633 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 389 627 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0331 Lele-ChrLele08 2079636 2085790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0331 199 628 Calmodulin-binding Proteins AT2G36910 34.304 5.88e-70 245