Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0302 ATGGATTTTGAGCCAAACTTTCATGAGAGTTTCTCTCTGCTTTCTGGGCTTTTCCCGGAAAATCCGTCAAAGTCTCAACCACTTTCACTCGCAATGTCACACACTCAACCTCCTCCTTCCCAGGTTAATCCGCCATTGTTGTTTCCCACCGACCAAAATTTCCACCATTTTCAACACTACCCTCAGCCGGATCTGAACGGGTCAAACCCAAACCCGATCTTTTTGAAGGATGCTCCATCTTCTTCCTTCAATATCCCTTTCTCTCACCCGACGACTCTTCCTTTTGATTCCGCCTTCCCAAACGAGCCCTTCAAAATCGACGCCGCCTTGCATGGTTGCCACAGTACTGGTCGGGCCTTCTGGGATTTCTCGAACAAGATCTCTCTTCCATCTGATTCGCCCTTGGCCTCACACATGGGCCCATCCCTGTCACCATTGTTCCATCAAGCTTATGGATCACCATTGAAGCCTAAGCTTCAGGACGAACTTTTTCTGTTTTTCCCTGAGAATAATAATCAGTGGGAACATGAAGCTCGTGCTGATCACAGGGAAGATGAAAGGAACAAGAAGCTGCAGATGCGAAAAGGTGGTGGTATTCTGAAGAACACCAATATCATCAAAGGACAATGGACACCAGAAGAGGACAGAATGTTGGTGCAATTGGTGGAGCGGTTTGGGATGAAAAAATGGTCGCAAGTGGCAAAGGCTTTGAATGGAAGGAAGGAGGCATGGACGGAAGAAGAGGACATGATCCTGATCGAAGCTCACAAGGAAGTAGGCAACAAGTGGGCCGAAATCGCTCGGAGGCTTCCCGGAAGGACGGAAAACACCATCAAGAACCATTGGAACGCCACCAAGCGCCGCCAGAATGCCAAGAAGCACAGAAACAAGGGACCCACATCGAGGCCTTCACTTCTTCAGGAATACATCAAGCAAGTCACTTCAGGCCAAGGAACCTCAAGGCGGCCTCAGATCAAACAAGAACGCGCTACTGACGACGACGACGATGACGACGAGCTGGTCTACTACAACAACAATGCCATGAGCAACGTCAGAGTTCGCTACGAAAGCGCCTCGGAAGATGACGACACCAGCTCTGGAGACTGGGAGGTTGAGATGTATGAGCCGGCGGAGGGAGACGCCGGCGCCTACGAGGATGATCAGGAGACGGCGTATTAG 1179 0.503 MDFEPNFHESFSLLSGLFPENPSKSQPLSLAMSHTQPPPSQVNPPLLFPTDQNFHHFQHYPQPDLNGSNPNPIFLKDAPSSSFNIPFSHPTTLPFDSAFPNEPFKIDAALHGCHSTGRAFWDFSNKISLPSDSPLASHMGPSLSPLFHQAYGSPLKPKLQDELFLFFPENNNQWEHEARADHREDERNKKLQMRKGGGILKNTNIIKGQWTPEEDRMLVQLVERFGMKKWSQVAKALNGRKEAWTEEEDMILIEAHKEVGNKWAEIARRLPGRTENTIKNHWNATKRRQNAKKHRNKGPTSRPSLLQEYIKQVTSGQGTSRRPQIKQERATDDDDDDDELVYYNNNAMSNVRVRYESASEDDDTSSGDWEVEMYEPAEGDAGAYEDDQETAY 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0302 392 ProSiteProfiles Myb-like domain profile. 240 286 IPR001005 -
Lele08g0302 392 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 240 290 IPR017930 -
Lele08g0302 392 MobiDBLite consensus disorder prediction 352 392 - -
Lele08g0302 392 Pfam Myb-like DNA-binding domain 210 240 - -
Lele08g0302 392 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 239 IPR017930 -
Lele08g0302 392 PANTHER MYB PROTEIN-RELATED 197 304 - -
Lele08g0302 392 MobiDBLite consensus disorder prediction 313 338 - -
Lele08g0302 392 Pfam Myb-like DNA-binding domain 241 283 IPR001005 -
Lele08g0302 392 SMART sant 240 288 IPR001005 -
Lele08g0302 392 SMART sant 206 238 IPR001005 -
Lele08g0302 392 MobiDBLite consensus disorder prediction 362 392 - -
Lele08g0302 392 Gene3D - 243 309 - -
Lele08g0302 392 Gene3D - 200 242 - -
Lele08g0302 392 CDD SANT 243 286 IPR001005 -
Lele08g0302 392 MobiDBLite consensus disorder prediction 285 304 - -
Lele08g0302 392 MobiDBLite consensus disorder prediction 285 299 - -
Lele08g0302 392 SUPERFAMILY Homeodomain-like 204 282 IPR009057 -
Lele08g0302 392 ProSiteProfiles Myb-like domain profile. 202 237 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0302 Lele-ChrLele08 1814315 1816241 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0302 201 316 MYB Transcription Factor Family AT4G18770 58.519 2.44e-45 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele08g0302 Myb_DNA-binding 1.4e-16 CL0123