Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0301 ATGGCTGCTACTGCAACGGCCTCTTCAGTGGGTCCAAGATATGCACCACATGACCCAACCCTTCCTAAACCATGGCGGGGACTTGTTGATGGTAAGACCGGTTATCTCTACTTTTGGAATCCCGAGACTAATGTCACCCAATACGAGAGGCCTACAAACTCAGCCCCCCTGCCAAAGTCTTCTTCAGTGCCTAGTTCTTCAGTCCAGGTATCACAAGGACCACGCCGGGACCACAGTCCTGATTTTAATGACAGGTATGGTAGAAGCAACGTTGGTGGATCAAATTCTGAAGCTGGATCTCGGAATCATCAGAATCCAAAAGGTGGTAGTCTTAGTTCTCATAATGTTCCAAATGGAATACACATGACCGGAAATGTTAGTTCTTCTTTCAAAAGTCATGGATCATCAGATGCAGAAGTTGGATTAACTCCAGAGTCTTATCGGCGTCGCCATGAAATAACTGTCTCTGGAGATAATGTTCCTCCACCTTTCACATCCTTTGGCTCTACCGGTTTTCCATCAGAGATTCTTAGAGAGGTACACAATGCTGGGTTCTCTGCCCCAACACCAATTCAGGCACAGTCATGGCCCATTGTTCTTCAAAGTAGAGATATAGTTGCCATTGCCAAAACAGGTTCCGGGAAAACCCTGGGATATTTAATTCCAGGATTCATCCATCTCAAACGTGTTGGTAATGACTCCAAATTTGGCCCCACTGTATTGGTACTGTCACCAACAAGGGAGCTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGCAAAATCATCCAGAATTTCTTGTGCTTGTTTGTATGGGGGAGCACCAAAGGGTCCTCAATTGAGAGACATTGACCGAGGAGCAGATATTGTGGTTGCTACTCCTGGCCGCTTGAATGATATTCTTGAGATGAGGAGAATTAGTCTTCATCAGGTGTCTTACCTAGTACTTGATGAGGCTGACCGTATGCTAGATATGGGTTTTGAACCTCAAATCAGGAAGATTGTGAAGGAAGTGCCTGCACGACGGCAAACCCTTATGTTTACCGCAACATGGCCTAGGGAGGTTAGGAAAATTGCAGCTGATCTTCTTGTCAATCCTGTTCAGGTTAACATTGGCAATGTTGACGAGCTTGTTGCTAATAAGTCCATTACACAGCATATAGAAGTATTGGCACCAATGGAGAAACACAGACGATTGGAGCAAATATTGCGGTCACAGGAGCCAGGATCAAAAATTATTGTTTTTTGTTCTACCAAGAAGATGTGTGATCAACTTGCTCGTAATCTTATGCGCCAGTTTGGGGCTGCTGCCATTCATGGGGATAAATCCCAGGCTGAGAGGGATCATGTGTTGAACCAATTTCGAACTGGGAGATCTCCTGTGCTTGTCGCAACAGATGTTGCGGCTCGAGGATTGGACATCAAAGATATTAGGGTCGTTGTCAATTATGACTTCCCTACTGGTGTGGAGGACTATGTTCATAGGATTGGAAGGACAGGGAGGGCAGGAGCCACTGGCTTGGCATACACCTTTTTTGGAGACCAGGATGCTAAACACGCTTCAGATCTAATCAAAATCTTGGAAGGTGCAAATCAGCGAGTCGCACCAGAACTCCATGATTTGGCATCACGTGGTGGTGGGATGAACAGATCCAGGCGATGGGGTTCTGGTGGTCATGGGGGACGCGGCGATTCTGGATATGGAGGACGGGGTAGTGATTCTGGATATGGGGGAAGGGGTAATGATTCTGGCTATGGGGGAAGGGGTGGGTGGGGAGACACTCCTGGTGGCCGAGGTGGAGGCCGTGGATTTGACTATGATATGCAGAGGAGGAATGATCGGAGCTGCAGTCGAAGTCCCAATAGGCATGAAAGGGCTGCACCACCTTCCCAAGGTTTTAGTTTTCACCACACAATGATGGAACGTAAAGGGGGCAGTGATCATGGCAAGAGCGTTGATCAAGATAGAAACCGAAGTCGCAGCCCTGTTAAGCATGATAGGGCACCATCTGTACGTGACCGTTCCCCAGGAAGATATAGTTTTCATCAAATGATGACGGAAGGTCGTGAGGACAGAAGTTCAAGATTCAGTAGTGGTGGGTCAGACAGAAATAAGTTGGACGATGGGAGATATGGCGGAGAAGAGGAGGAAGGGATGATTCCTGATGAAGGCACGATGCCTCAAGATGACCATGCTTCTTATGCTGTTGCCGATTAG 2220 0.4725 MAATATASSVGPRYAPHDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPTNSAPLPKSSSVPSSSVQVSQGPRRDHSPDFNDRYGRSNVGGSNSEAGSRNHQNPKGGSLSSHNVPNGIHMTGNVSSSFKSHGSSDAEVGLTPESYRRRHEITVSGDNVPPPFTSFGSTGFPSEILREVHNAGFSAPTPIQAQSWPIVLQSRDIVAIAKTGSGKTLGYLIPGFIHLKRVGNDSKFGPTVLVLSPTRELATQIQDEAVKFAKSSRISCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMFTATWPREVRKIAADLLVNPVQVNIGNVDELVANKSITQHIEVLAPMEKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLMRQFGAAAIHGDKSQAERDHVLNQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQRVAPELHDLASRGGGMNRSRRWGSGGHGGRGDSGYGGRGSDSGYGGRGNDSGYGGRGGWGDTPGGRGGGRGFDYDMQRRNDRSCSRSPNRHERAAPPSQGFSFHHTMMERKGGSDHGKSVDQDRNRSRSPVKHDRAPSVRDRSPGRYSFHQMMTEGREDRSSRFSSGGSDRNKLDDGRYGGEEEEGMIPDEGTMPQDDHASYAVAD 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0301 739 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 520 IPR027417 -
Lele08g0301 739 SMART ww_5 20 53 IPR001202 GO:0005515
Lele08g0301 739 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 165 193 IPR014014 GO:0003724
Lele08g0301 739 ProSiteProfiles WW/rsp5/WWP domain profile. 19 53 IPR001202 GO:0005515
Lele08g0301 739 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 399 543 IPR001650 -
Lele08g0301 739 MobiDBLite consensus disorder prediction 685 718 - -
Lele08g0301 739 SMART helicmild6 424 504 IPR001650 -
Lele08g0301 739 MobiDBLite consensus disorder prediction 605 622 - -
Lele08g0301 739 ProSitePatterns WW/rsp5/WWP domain signature. 25 51 IPR001202 GO:0005515
Lele08g0301 739 SMART ultradead3 184 387 IPR014001 -
Lele08g0301 739 MobiDBLite consensus disorder prediction 88 136 - -
Lele08g0301 739 Gene3D - 375 545 IPR027417 -
Lele08g0301 739 FunFam ATP-dependent RNA helicase RhlB 374 546 - -
Lele08g0301 739 Pfam DEAD/DEAH box helicase 189 359 IPR011545 GO:0003676|GO:0005524
Lele08g0301 739 MobiDBLite consensus disorder prediction 1 28 - -
Lele08g0301 739 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 196 370 IPR014001 -
Lele08g0301 739 MobiDBLite consensus disorder prediction 538 739 - -
Lele08g0301 739 FunFam probable ATP-dependent RNA helicase DDX17 135 373 - -
Lele08g0301 739 SUPERFAMILY WW domain 13 53 IPR036020 GO:0005515
Lele08g0301 739 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 316 324 IPR000629 -
Lele08g0301 739 MobiDBLite consensus disorder prediction 47 140 - -
Lele08g0301 739 MobiDBLite consensus disorder prediction 47 76 - -
Lele08g0301 739 CDD SF2_C_DEAD 384 513 - -
Lele08g0301 739 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 130 543 - -
Lele08g0301 739 MobiDBLite consensus disorder prediction 641 674 - -
Lele08g0301 739 Gene3D - 16 63 - -
Lele08g0301 739 CDD WW 22 52 IPR001202 GO:0005515
Lele08g0301 739 Gene3D - 142 374 IPR027417 -
Lele08g0301 739 Pfam Helicase conserved C-terminal domain 396 504 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0301 Lele-ChrLele08 1807026 1811171 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0301 163 542 Eukaryotic Initiation Factors Gene Family AT3G19760 33.858 1.81e-65 221