Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0279 ATGTGCGGATATCGAAGTCACCTCAGATTACAGTACTGGGCCTCTAGACCTCCATTGTCAAAAGAAGTCTGTTTTCTTTCCCTGTCTTCTGATCCCAAGCTGTTGGAACTTTCAGTATGTATAGTTGCGTTACTATCTCTATTGACAGGAGTTTGCTCCACCCTAGCCATCACAGAGACAAAGTCATTTAGACTCAGCAGCAAACATGAAATGCATATTAGAGCCACGAACAAGTGTGCGGCATGCTTTAGGCAGTTCAACAAGTTGGAGCACTTAGTGGAGCACATGAGGATATCATATCATTCGGTTCACGAACCCACCTGTGGCGTTTGCGGGAAACACTGCAGATCATTTGAGTCTCTGAGGGAACACCTTATAGGTCCATTACCAAAACAGGAATGCAGAGACATTTTTGCCAACCGAGGATGCAGGTTTTGCTTGAAGGGACTGGTTGGACGCTTTGCAAACCTGGGGATTCGTGATAATTTGACTATTGGAAAAGGGCCACAGGTTGTTGCACTTGCTTGCAAAATGGTGGGAGGTGGCAGTGATGGCTCACTTGATCTCTGTGCAAGGGTCTGCATAATAGATGACCACGAAAACATCATATTCCATTCTTACGTGAAGCCTCCAATTCCTGTCACAAACTACAGGTACGAGACAACAGGTATTCGACCAGAATACTTGAGGGATGCAATGACGATGAGGCAAGTGCAGAGGAAGGTTCAAGACTTCCTCTGCAACGGAGAACCCATGTGGAAGATTCGACCAAATTGCGGGAGAGCCAGGATTCTTGTTGGGCATGGGTTAGATCATGACCTGGAGTCTCTGCAAGTGGAATATCGGGCAGAAATGATGAGGGACACTGAAAAATACCCTCCATTGATGAAAACAAGCAAGCTGAGCAACTCCCTCAAGTATGAGATACAGACAGGGATACAGGATCCGTACGAGGATTGTGTGGCAACGATGAGGCTGTACATGAGGATGAGATTCCAAGCGCACAGAAGAGAGGATTATCCGTTGGCTTCAGAGCCTCAAAATAAGAACAACTTCGCTTCATGGAGGCAAAGAGAGCTTGAGAGAATGAGCCCAGATCAAATGCTTGCTATCTCCAGGTCTGACTATCACTGCTGGTGCCTCGACTCCTTCTAG 1155 0.4667 MCGYRSHLRLQYWASRPPLSKEVCFLSLSSDPKLLELSVCIVALLSLLTGVCSTLAITETKSFRLSSKHEMHIRATNKCAACFRQFNKLEHLVEHMRISYHSVHEPTCGVCGKHCRSFESLREHLIGPLPKQECRDIFANRGCRFCLKGLVGRFANLGIRDNLTIGKGPQVVALACKMVGGGSDGSLDLCARVCIIDDHENIIFHSYVKPPIPVTNYRYETTGIRPEYLRDAMTMRQVQRKVQDFLCNGEPMWKIRPNCGRARILVGHGLDHDLESLQVEYRAEMMRDTEKYPPLMKTSKLSNSLKYEIQTGIQDPYEDCVATMRLYMRMRFQAHRREDYPLASEPQNKNNFASWRQRELERMSPDQMLAISRSDYHCWCLDSF 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0279 384 SUPERFAMILY Ribonuclease H-like 184 331 IPR012337 -
Lele08g0279 384 Gene3D Classic Zinc Finger 54 130 - -
Lele08g0279 384 FunFam RNA exonuclease 4 167 346 - -
Lele08g0279 384 Gene3D - 168 346 IPR036397 GO:0003676
Lele08g0279 384 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 168 377 - -
Lele08g0279 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Lele08g0279 384 SMART exoiiiendus 170 336 IPR013520 -
Lele08g0279 384 CDD REX4_like 172 327 IPR037431 GO:0006364|GO:0008408
Lele08g0279 384 Pfam Exonuclease 191 301 IPR013520 -
Lele08g0279 384 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0279 Lele-ChrLele08 1651373 1654777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0279 77 383 C2H2 Transcription Factor Family AT5G40310 68.915 4.87e-177 495