Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0259 ATGTTTCATGGGTCTCCCTTTATGATCTGTGGGATGTCAGAAAGCATGTATTATAAGTGGTTTTTTAACCATACCCACTTGAAGATATCTTGGATTCATTATCAAATCCAGCAAAAAGACGGTTACTTGAGCTACCCTCCTCCTGTTTTGCCTTCATCTTCGCCCCCATATCCCGGTGCTTTCCACAGAGAAACAGGATCTTCTTCCTCGTCCGGTATTAGAATTAGTCCGGCTGTTCTTTTCATTATAGTGATTCTGGCCGTGCTCTTTTTCATTTCTGGTCTTCTACACCTGCTTGTTAGATTTCTCATAAAGCACCCATCTTCCTCAGCATCTGAATCTAACAGACACCAAGAAATCTCAACCTCCGATGCTCTTCAAAGACAACTCCAACAGCTCTTCAATCTTCATGACTCTGGTCTGGATCAAGCTTTCATTGACGCACTTCCTGTTTTCCAGTATAAAGAGATAGTTGGCCTGAAAGAACCATTTGACTGTGCTGTGTGCCTCTCTGAGTTTTCTGAGAAAGACAAGCTCAGATTGCTTCCAATGTGCAGCCATGCCTTTCATATTAATTGTATAGACACGTGGCTTCTATCCAATTCCACATGTCCACTTTGCAGAGGAACTCTGTTAACTCCTGGGTTCTCAATTGAAAACCCCATATATGATTTTGATGATTTAAGGGAAGAGGATGGGTGTAACGGTGAAAATGGGTTCACAACTTTTAGACAGAAAACCGTTGAAATTGAAGAAACTGTAGTAGAGAAAGGAGTGTTGCCTGTAAAACTTGGTAAATTCAGAAGGCTGAATGTGGAGGCAGGGGAGAGTGGAGGAGGAGGAGGGGGAGGAGGAGGAGAGACGAGTAGCAGCAATTTAGATGCAAGAAGATGTTACTCAATGGGAACTTACCAGTATGTGTTAGCCAATTCAGACCTCCGAATTGCCTTAAACCATGATGACCATCAAGGCCGAGAGGTAAGGCTTACAGAAGGACTAGAACAATCTGAGAAGCTTTCCATGGAGGAAGCAAAGAAGATTAGAAGTGTGAGTAAAGGTGAGAGCTATTCTGTTTCCAAGATCTGGCAATGGTCCAAGAAGAGCAAGTTTTCTAGTTCTTCCGAAGAAGATCAAGTGGGCATGCCATCTTCACTTAATACGGACCTGTCATGGATGAGAAGAACACAAGGCACAACATGA 1200 0.43 MFHGSPFMICGMSESMYYKWFFNHTHLKISWIHYQIQQKDGYLSYPPPVLPSSSPPYPGAFHRETGSSSSSGIRISPAVLFIIVILAVLFFISGLLHLLVRFLIKHPSSSASESNRHQEISTSDALQRQLQQLFNLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLSEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRGTLLTPGFSIENPIYDFDDLREEDGCNGENGFTTFRQKTVEIEETVVEKGVLPVKLGKFRRLNVEAGESGGGGGGGGGETSSSNLDARRCYSMGTYQYVLANSDLRIALNHDDHQGREVRLTEGLEQSEKLSMEEAKKIRSVSKGESYSVSKIWQWSKKSKFSSSSEEDQVGMPSSLNTDLSWMRRTQGTT 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0259 399 CDD RING-H2_PA-TM-RING 165 208 - -
Lele08g0259 399 ProSiteProfiles Zinc finger RING-type profile. 166 208 IPR001841 -
Lele08g0259 399 MobiDBLite consensus disorder prediction 365 399 - -
Lele08g0259 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 213 IPR013083 -
Lele08g0259 399 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 70 362 - -
Lele08g0259 399 SMART ring_2 166 207 IPR001841 -
Lele08g0259 399 FunFam RING-H2 finger protein ATL46 128 213 - -
Lele08g0259 399 SUPERFAMILY RING/U-box 145 214 - -
Lele08g0259 399 Pfam Ring finger domain 165 208 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0259 Lele-ChrLele08 1545187 1546386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0259 94 377 C3H Transcription Factor Family AT2G18650 40.062 2.03e-60 199