Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0254 ATGCATGTGTCGGGCGGTGAGGAGTGGAAACAGAGGCGGCACATGTGGCCAGTCCCTGCCCCCGCGACGACTGTAGCTCCCGCTGCCGATTCCTCATCATCCGAATTCATATGCAAAGATGGACGTGAGATCCGTGTTGGTGATTGTGCACTTTTCAAGCCACCCCAAGATTCCCCACCTTTTATTGGAATAATTCGTAAATTAACGTTGAAGAAAGAAGAAAGTCCGAGTTTAGAAGTGAATTGGCTTTACAGACCTGCTGATCTGAAGCTTGCAAAAGGGATCCAATTGGAAGCTGCGCCAAACGAGGTCTTTTACTCCTTTCACAAGGATGAGACACCTGCTGCATCATTACTCCATCCGTGTAAAGTTGCATTCCTTCGTAAAGGTGTTGAACTTCCTTCAGGGATATCCGCATTTGTCTGTAGACGAGTGTATGACATTCAGAGTGAGCGTTTATGGTGGCTAACTGATAAAGATTACATTAATGAACGACAAGAAGAAGTTGACCAGCTATTAGATAAGACAAAACTAGAAATGCATGGGGCAGTGCAGTCAGGAGGCCGTTCTCCAAAACCCTTGAATGGTCCAACATCAACACCTTCACTTAAATCTGGTTCTGATAGTGTTCAAAATAGTTCTTCCTTTGGTTCACAGGGTAAGGGAAAGAAGAGAGAACGGGGTGATCAGGTATCTGATTCATCTAAAAGGGAACGATTAATCAAAACAGAAGATGGTGACACCGGTCAACATAGGCCAGAAAACATGTTAAAGTCTGAGATTGCTAAAATTACTGACAACGGTGGTCTTGTGGACTTTGAGGGAGTAGAAAGACTGGTACAGCTCATGCAACCTGACAGTGCTGATAAAAAAATAGATTTGGCTGGGCGAATAATGCTAGCTGATGTAATATCAATCACAGATCGGTTTGATTGTCTTGGATGGTTTGTACAGCTCAGGGGTCTGCCTGTATTGGATGAATGGCTCCAGGAGGTCCATAAGGGGAAAATTGGTGATGGTAATACGCCTAAAGAAAGTGACAAGTCTGTTGAAGATTTGCTGTTAGCTCTACTTCGTGCATTGGATAAGCTTCCAGTGAACCTTCATGCTTTACAGACATGTAATGTTGGAAAGTCTGTGAATCATTTACGCACTCACAAGAATTCTGAAATTCAAAAGAAAGCTAGGAGCTTAGTTGACACTTGGAAGAAACGTGTTGAGGCTGAAATGAATATTAACGATTCAAAATCTGGATCTAGCCGGGGTGTTTCTTGGCCAGCAAAGCCTGCATCCTCTGAGGTGACTCATGTTGGAAGTCGGAAGACAGGCGGATCAGCTGAGGTTGCTGCAAAGAGCTCTACAATGCTACCATCTGCACCCAAAAACTCTTTGGCTAAGATTAGCTCAGGAGAATCACTGTCCAAGCTCTCGCCATCTTCCACATCAACTAAAGCTACTACGACCTCAGTAGCCTGTAATTCAAAGGAGCAAAACATTAAAGCTGGCACTGGAACATCAGATTTACCCTTGACACCTATTAAGGAGGAAAGGAGCAGCAGTTCTAGCCAGTCTCAAAACAACAGCCTATCTTGTTCTAGTGAACAAGCAAAAACTATTGGTTCTTGTAGGGAAGATGCAAGGAGCTCCACTGCTGTGTCAATGAGTGTGAGCAAAATGCATGGCAGTGCATCTCGCCCTCGGAAATCAAGCAATGGTTTGCATGGGTCTGCTTTAACTGCAGTTCAGAAGGAGCCCCATTCTGGAAAAAACTCGAGTAGAAACTCAGCCTCCGAGAAGGTTTCACCGAATCAACCAGCCCATGAGAAGTCACCTGATGTGCCTCTTCCTGATCATGGAAGTAATCAGAGACTGATTGTTAGGTTGCCAAACACTGGCCGAAGTCCTGCCAGGGGAGCTGGTGGGGGCTGTGAAGATCCTGCAATTCTGTCTGGCAAAGCCTCACCTCCTGGAGACAAGCAGGAGAATGTGGATAGAAGATTGAAATCCAAAACTGATGGTTCTCAGAACAATAATGCCTCGAATATGGCCACTGATGTTTGTGATGCTAGCGAAGCTGTGGCTGATTATGAGGAAGGTAGTGGCTCGCCAACTGGTGAAGGATGCAGGACCAGTGAAGATGGTTATAAACTCACGGAAGCATCAAAACCAACTAGTTCATCAGGATTTCTTTCCAGATCAGGGCAGACTTATGATGCTTCCATGAGCTCCATAAATGCATTAATTGAAAGTTGTGTGAAAATTTCAGAAGCAAGTCCCTCTGTGTCCCCTGTAGATGATGCTGGGATGAACCTACTTGCTACTGTAGCTGCTGGAGAAATATCTAGGTCAGAAAATGTGACGCCAGCAGTTTCTCCTGGGAGGAAGTCTCCTGCAGCAGATGAATCATGCTCAGGCAATGATAGTAAGTTACAACATTCAAGTGAAGCAGTTGCATGCACTCTTGAACATTTGAAGGGTGAAGCTACTGAAGATCATGTAAACACCACTGATCCTTTGCAGCTCAAGAATGATGCAAGACATACCGTAGGATCAAGATCATGTGACTTGTCTGGAGATGGTGAAACTACACAATCTAGTTGCAAAGAGAAAACTGGTGATGGTAAAAATCAAATGAATTCTTCCCCTACAGCTTTGTCACATAACGTGGAAGGTCCATTCTTAGGGCCTGATATCGAAGAGGAAGCTTCTGAAACATTATTGCCTTCTAAAAAGGATAATGTTGCAGAGCGTGAGGGAGCTAGTCCGCTTCATGAGCAGAGGAAATTGGAAACTCGTTGGGCTAAGAGCAGCAACAATTCAGACTCTAAAATGAAAACAAGGACTTCTATTGATGAGGGCCAGAAGGTTGATCATGTTAATGAGAAGAAGATGGAGAACGAAGTTTCAGTTTGTGGAAGGCCTCATGTAAGTCTAAATTTAGAGAAGGAAGTGTGCGAAAAATTACCTGAATCATCTACAGGTTTGGGTAATGAAAACCTGGTCAGTGGGGAGAAAAGTGTCGTGTCAGTGCAAAAGCCCACTCTGGCAGAAAACCGTGAGTTTGTTGAGGGCAGAAATGAGAATGTTGTGGTACCACCTGCTCCGAGTAATCATTTGATGGAATATAAGGCTGTGAGTGCTGTTGACGTGAAACCATGTGAGGTGGAGCATAGTAAGGAAAGACAAAGGGATCTGGACTCATCAGGGCCTGCTGTCAACAACCAATGTACTGCAGAGAATTTGGATAGAAAAGAGGTTCTTGGTCTCGGCACTGATACATCAGCACAGTCTGAGTCTCCTAAAAATTCTGTACAAGAGAATGAAGTGCTAAAAAAGCCTTCTGGGTTTAATTTGGACAGAGTTGTGTCTGATGGTGCAGCAGAACAGCATGCCTCTGGTCTTAGTGATTCACTTACTGCCAGAGTCTCGGATATAGCAGTGAAGCTGGACTTTGATTTAAATGAGGGATTTCCTGTTGATGATGTGAATCAAGGGGATGTTGTGAGACAGGAAGAACCTACCACATCATCTGCAGTCCACATTCCATGCCCTTTGCCTTTTCCTATTTCTTCTATGTCTGGGGGCTTCCATGCTTCAATTACTGTGGCTTCTGCTGCTAAAGGGCCTGTTATTCCACCAGAGAACCCGTTGCGGTGTAAGGGGGAACTTAGGTGGAAAGGGTCAGCTGCTACCAGTGCATTCCGTCCAGCTGAGCCCAGGAAAAACACAGAGCATCCATTAAATACAAGTGATAGTAGTGGTACCAAGCATGGTCGTGCTCCTCTAGATTTTGATTTAAATGTGCCTGATCAAAGGAGTTTTGAGGATGTGGCTTCCCATGGGTCTTCAGAGACTTGTTTAGAATCCTTGCCTCGTGACCGCGGGACTGCAGGACTTGATCTTGATTTAAACAGGGTTGACGAGACTCCTGATTCTGGTTGTTTTTCTGTGAGCAAACTGGATATTCCTTCTTTGCCAACTAAACCTTCATTATCTGGTGGATTATCCAGCGGTGGAAATATATCAAGAGACTTTGATTTAAATAATGGGCCAGGCCTTGATGAAGTTGGGACTGAAGCCCCAGCACGTAACCAGCGGATAAAAAGTACTGTACCAATGCCTTCGGCTGTTCATGGTGTAAGAACAAATAATGCTGATTTTGGGAATTATTCGTCATGGTTTCCGTCAGGCACCTCCTATTCTGCGATCAATATGCCACCACTTCTACCTGGTAGAGGAGAACAGAGCTTTGTTGCTGGTACTGGAGCGCAGCGAATTTTGGGTCCTCCTGGTAGCACTTCTTTTGGTCCTGAAATCTATAGAGGGGCAGTTCTTTCATCCTCTCCGGCTGTTGCTTATCCTCCCACTACACCATTTCAGTACCCAGGATTTCCTTTTGAAACCAATTTTCCTTTGTCTTCAAATTCCTTTTCTGGCTGTTCAACACCCTTCATGGACTCCTCAACAGCAGGTGGACTATGCTTCCCTACCATGCCTTCACAGCTAGTTGGGCCTGGTGGTGTTGTCTCATCCAATTTTCCCCGTCCTTATGTTATGACCCTCCCAGGTGGTACAAGTAATGTGATGCCTGAAAGTAGAAAATGGGGAGGTCAAAGTCTGGATCTTAATTCAGGCCCTGGTGGTGCAGATGCAGAACGGAGAGATGATAGATTGCCTTCAGGGTTGAGGCAACCATCTGTCTCAAGTTCCCAAGCCTTGATGGAGGAACAGATGAAGATGTTTCAGGTGGCAGGAGGTGTATTGAAGAGAAAGGAACCTGACGGTGGTTGGGATGGAGCTGATAGATACAACAGCTATAAACAACCCTCTTGGCAATAG 4839 0.4505 MHVSGGEEWKQRRHMWPVPAPATTVAPAADSSSSEFICKDGREIRVGDCALFKPPQDSPPFIGIIRKLTLKKEESPSLEVNWLYRPADLKLAKGIQLEAAPNEVFYSFHKDETPAASLLHPCKVAFLRKGVELPSGISAFVCRRVYDIQSERLWWLTDKDYINERQEEVDQLLDKTKLEMHGAVQSGGRSPKPLNGPTSTPSLKSGSDSVQNSSSFGSQGKGKKRERGDQVSDSSKRERLIKTEDGDTGQHRPENMLKSEIAKITDNGGLVDFEGVERLVQLMQPDSADKKIDLAGRIMLADVISITDRFDCLGWFVQLRGLPVLDEWLQEVHKGKIGDGNTPKESDKSVEDLLLALLRALDKLPVNLHALQTCNVGKSVNHLRTHKNSEIQKKARSLVDTWKKRVEAEMNINDSKSGSSRGVSWPAKPASSEVTHVGSRKTGGSAEVAAKSSTMLPSAPKNSLAKISSGESLSKLSPSSTSTKATTTSVACNSKEQNIKAGTGTSDLPLTPIKEERSSSSSQSQNNSLSCSSEQAKTIGSCREDARSSTAVSMSVSKMHGSASRPRKSSNGLHGSALTAVQKEPHSGKNSSRNSASEKVSPNQPAHEKSPDVPLPDHGSNQRLIVRLPNTGRSPARGAGGGCEDPAILSGKASPPGDKQENVDRRLKSKTDGSQNNNASNMATDVCDASEAVADYEEGSGSPTGEGCRTSEDGYKLTEASKPTSSSGFLSRSGQTYDASMSSINALIESCVKISEASPSVSPVDDAGMNLLATVAAGEISRSENVTPAVSPGRKSPAADESCSGNDSKLQHSSEAVACTLEHLKGEATEDHVNTTDPLQLKNDARHTVGSRSCDLSGDGETTQSSCKEKTGDGKNQMNSSPTALSHNVEGPFLGPDIEEEASETLLPSKKDNVAEREGASPLHEQRKLETRWAKSSNNSDSKMKTRTSIDEGQKVDHVNEKKMENEVSVCGRPHVSLNLEKEVCEKLPESSTGLGNENLVSGEKSVVSVQKPTLAENREFVEGRNENVVVPPAPSNHLMEYKAVSAVDVKPCEVEHSKERQRDLDSSGPAVNNQCTAENLDRKEVLGLGTDTSAQSESPKNSVQENEVLKKPSGFNLDRVVSDGAAEQHASGLSDSLTARVSDIAVKLDFDLNEGFPVDDVNQGDVVRQEEPTTSSAVHIPCPLPFPISSMSGGFHASITVASAAKGPVIPPENPLRCKGELRWKGSAATSAFRPAEPRKNTEHPLNTSDSSGTKHGRAPLDFDLNVPDQRSFEDVASHGSSETCLESLPRDRGTAGLDLDLNRVDETPDSGCFSVSKLDIPSLPTKPSLSGGLSSGGNISRDFDLNNGPGLDEVGTEAPARNQRIKSTVPMPSAVHGVRTNNADFGNYSSWFPSGTSYSAINMPPLLPGRGEQSFVAGTGAQRILGPPGSTSFGPEIYRGAVLSSSPAVAYPPTTPFQYPGFPFETNFPLSSNSFSGCSTPFMDSSTAGGLCFPTMPSQLVGPGGVVSSNFPRPYVMTLPGGTSNVMPESRKWGGQSLDLNSGPGGADAERRDDRLPSGLRQPSVSSSQALMEEQMKMFQVAGGVLKRKEPDGGWDGADRYNSYKQPSWQ 1612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0254 1612 Pfam TFIIS helical bundle-like domain 357 406 IPR017923 -
Lele08g0254 1612 Gene3D - 26 267 IPR043151 -
Lele08g0254 1612 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1612 - -
Lele08g0254 1612 MobiDBLite consensus disorder prediction 191 219 - -
Lele08g0254 1612 ProSiteProfiles BAH domain profile. 42 157 IPR001025 GO:0003682
Lele08g0254 1612 MobiDBLite consensus disorder prediction 1523 1612 - -
Lele08g0254 1612 ProSiteProfiles TFIIS N-terminal domain profile. 323 409 IPR017923 -
Lele08g0254 1612 MobiDBLite consensus disorder prediction 181 255 - -
Lele08g0254 1612 MobiDBLite consensus disorder prediction 829 950 - -
Lele08g0254 1612 MobiDBLite consensus disorder prediction 412 426 - -
Lele08g0254 1612 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 311 420 IPR035441 -
Lele08g0254 1612 MobiDBLite consensus disorder prediction 1090 1110 - -
Lele08g0254 1612 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 274 410 IPR035441 -
Lele08g0254 1612 SMART BAH_4 42 157 IPR001025 GO:0003682
Lele08g0254 1612 MobiDBLite consensus disorder prediction 446 505 - -
Lele08g0254 1612 MobiDBLite consensus disorder prediction 1229 1263 - -
Lele08g0254 1612 MobiDBLite consensus disorder prediction 410 684 - -
Lele08g0254 1612 MobiDBLite consensus disorder prediction 1525 1539 - -
Lele08g0254 1612 CDD TFIIS_I 365 407 - -
Lele08g0254 1612 Pfam BAH domain 44 152 IPR001025 GO:0003682
Lele08g0254 1612 MobiDBLite consensus disorder prediction 1277 1303 - -
Lele08g0254 1612 MobiDBLite consensus disorder prediction 903 934 - -
Lele08g0254 1612 MobiDBLite consensus disorder prediction 512 604 - -
Lele08g0254 1612 MobiDBLite consensus disorder prediction 783 809 - -
Lele08g0254 1612 MobiDBLite consensus disorder prediction 855 887 - -
Lele08g0254 1612 MobiDBLite consensus disorder prediction 1055 1112 - -
Lele08g0254 1612 MobiDBLite consensus disorder prediction 1562 1576 - -
Lele08g0254 1612 MobiDBLite consensus disorder prediction 220 255 - -
Lele08g0254 1612 SMART TFS2_5 329 408 IPR003617 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0254 Lele-ChrLele08 1514447 1520552 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lele08g0254 BAH 7.8e-11 No_clan