Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0246 ATGGGCAAAAGCATGGAGTTTCAGAACGCTGTGAGTTTCGTGGTCCATGGATCCATACAGAAAAATCGGGCTTCTCACAAAGCAACAGAACCAGAGGAATTTAACGACGCTGTCGCTCCCGGCCGAAAATGGAAGATCTTCTACAAGTCATCGTCGGCCGTCCCTTCCAAACAATCAAAACCTGAAAAGAAACGGCCCCCGGAAGAATTTCTCTGTCCCATATTAGGGTCTCTCATGGCAGACCCCGTCATCGTCTCCTCAGGCCACACCTTCGAGCGAGTCTCTGTTCAATCTTGTAAAAATTTAAAGTTCACACCACGCCTCTCCGATGGCTCCACGCCCGATTTTTCTACCGTGATTCCCAACCTTGCCCTTAAATCTGCAATTGCTAAATGGTGCCAGAACTCCGCCAACCTACTCCCCGAGCCACCTGATGTAGCTTCTTCTGAGAAGTTCGTACATAGACTAATGATGATGAAGACCCAGAAGACAGATTCAAGTATCCAGAACCCGCAGAAGGTAGTAATCACAGAGGAAGAGCTTATTCAAGGAATGAAGGAGAACCCACCTGTGAATTTCAATCACGCAGCGACCGAGGTGACTCGACGGGCAGCTCACCCTTACTGGAACTCAGAGGACTCGGTGGGTTCCTCTCCTGCATCTCCACCTATGCAACTTTCAACTCGACCAAGCTGCTATTCTTCTGCTTCATCCTCAGAAATCGAAGTCATTATTCCTAGCTCACCTGAAGAAGAGAATATCTTGGCCAAGTTAAAAAGCTCACAAGTGCCCGAGATCGAAGAAGCCGTTATTTCACTAAGAAAGCTCACGAAAACTAGAGAGGATACGAGGTCTCATATCTGCAGTCCTCGATTCCTCTCCGTCCTTCGATCGTTGATAGTGTCCAAGCACACTAATATTCAGGTGAACGCGGTCGCAGCTCTGGTGAACCTCTCATTGGAGAAAGTGAACAAAGTGAAGATACTCCGGTCTGGAATCGTTCCTCCGTTGATTGACGTATTGAAGGGAGGATCCCCTGAGGTGCAGGAACACGCTTCCGGCGCACTCTTCAGCTTGGCCATTCACGACGATAACAAAACTGCAATCGGTGTGCTAGGTGCTTTGCCGCCGCTGCTCCACTTGCTTCAATCCGAGAATGAGCGAACGCGGAATGACTCGGCGCTCGCACTGTACCACCTCTCCCTCGTACAGAGCAACCGGACCAAGATGGTAAAACTCGGGTCGGTTCCGATCCTAATGAGCATGATAAAGTCGGGTAAGATCAGGGGACACGTGCTACTCATACTATGCAACTTGGCGTCTTGTGGGGACGGTCGGGCGGCGATGTTGGATGCGCAGGCGGTGGAGTGCTTGGTGGGGTTGCTAAGCGGTAGCGAGTTGGGTTACGGGTCGACCCGGGAGAGCTGCGTGGCTGTGCTGTATGCACTGAGTCACGGAGGGTTGAGGTTTAAAGCGGTGGCAAGGGCGGCGGGGGTGGTGGAGGTGTTGAAGGAGGAGGACAAGGTGGGAAGCGAGAGGGCAAGGGAGAAGGTGAAGAGGATACTGGAGATGATGAGGGTGAAGGAGGAAACCGAAGAGGACGACGTCGACTGGGAGGCGCTTCTTGACTCGGGTTTGAGTAGTCTGAGTCGGGCCTGTCGTGAGTCGAGCGAGTTATGA 1680 0.519 MGKSMEFQNAVSFVVHGSIQKNRASHKATEPEEFNDAVAPGRKWKIFYKSSSAVPSKQSKPEKKRPPEEFLCPILGSLMADPVIVSSGHTFERVSVQSCKNLKFTPRLSDGSTPDFSTVIPNLALKSAIAKWCQNSANLLPEPPDVASSEKFVHRLMMMKTQKTDSSIQNPQKVVITEEELIQGMKENPPVNFNHAATEVTRRAAHPYWNSEDSVGSSPASPPMQLSTRPSCYSSASSSEIEVIIPSSPEEENILAKLKSSQVPEIEEAVISLRKLTKTREDTRSHICSPRFLSVLRSLIVSKHTNIQVNAVAALVNLSLEKVNKVKILRSGIVPPLIDVLKGGSPEVQEHASGALFSLAIHDDNKTAIGVLGALPPLLHLLQSENERTRNDSALALYHLSLVQSNRTKMVKLGSVPILMSMIKSGKIRGHVLLILCNLASCGDGRAAMLDAQAVECLVGLLSGSELGYGSTRESCVAVLYALSHGGLRFKAVARAAGVVEVLKEEDKVGSERAREKVKRILEMMRVKEETEEDDVDWEALLDSGLSSLSRACRESSEL 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0246 559 PANTHER U BOX DOMAIN-CONTAINING 49 526 - -
Lele08g0246 559 Pfam U-box domain 67 135 IPR003613 GO:0004842|GO:0016567
Lele08g0246 559 ProSiteProfiles U-box domain profile. 65 139 IPR003613 GO:0004842|GO:0016567
Lele08g0246 559 FunFam RING-type E3 ubiquitin transferase 249 525 - -
Lele08g0246 559 Gene3D - 250 527 IPR011989 -
Lele08g0246 559 SMART arm_5 362 402 IPR000225 GO:0005515
Lele08g0246 559 SMART arm_5 280 320 IPR000225 GO:0005515
Lele08g0246 559 SMART arm_5 321 361 IPR000225 GO:0005515
Lele08g0246 559 SMART arm_5 403 441 IPR000225 GO:0005515
Lele08g0246 559 SMART arm_5 442 485 IPR000225 GO:0005515
Lele08g0246 559 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 332 369 IPR000225 GO:0005515
Lele08g0246 559 SUPERFAMILY RING/U-box 58 142 - -
Lele08g0246 559 MobiDBLite consensus disorder prediction 211 232 - -
Lele08g0246 559 FunFam RING-type E3 ubiquitin transferase 47 138 - -
Lele08g0246 559 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 140 IPR013083 -
Lele08g0246 559 SUPERFAMILY ARM repeat 252 526 IPR016024 -
Lele08g0246 559 SMART Ubox_2 69 132 IPR003613 GO:0004842|GO:0016567
Lele08g0246 559 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 373 415 IPR000225 GO:0005515
Lele08g0246 559 Pfam Kinesin-associated protein (KAP) 301 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0246 Lele-ChrLele08 1466235 1467914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0246 61 558 U-box Gene Family AT5G40140 55.357 8.34e-180 516