Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0236 ATGGCCACCGTCCCTGCCAGCTCTTCCCCTCCATGGAGCCCTAACCCTGATTTTGATCTTGACCCCTCTCTGCCAAGTCCCCCTAATAGTTCGCCTCAGTCTCATGCTCCGACGACCCCTTCCCTGCTTCAACTATCTTTCAACCAAGATCAAGCTTGCTTCGCCGCCGCCACTGACAACGGGTTTCGTATCTACAATTGCGATCCATTCCGGGAGCTCTTCCGCAGGGAGTTTGATGGAGGCGATGGCAGTACTAGGGGGATTGGTCATGTGGAAATGCTCTTTCGTTATAATATGCTGGCACTGGTTGGAGGTGGCACCAATCCTCAATACCCTCCCAGCAAGGTGATGATCTGGGATGATCATCAAAGCAGGTGCATCGGGGAGCTTTCATTCCGATCAGCTGTTCGTGGTGTCCGGCTTCGACGAGACCGAATAATTGTAGTTGTGGAGCAGAAGATTTTTGTGTACAATTTCGCTGACTTTAAGTTACTTCATCAAATTGAGACCATTGCAAACCCGAAGGGGCTCTGCGCAGTTTCGCAATTGGCCGAGTCTATGGTATTGGCGTGTCCCGGTTTGCATAAGGGTCAGATACGAGTTGAGCATTATGCACAGAACAAAACCAAATTCTTTTCGGCTCATGATTCAAGAATAGCTTGTTTCGCTCTTACACTTGATGGTCAGTTACTCACCACCGCCAGCACCAAGGGTACTTTAATTCGAATTTTTGATACAGCCGATGGCACGCAGCTCCAAGAAGTAAGAAGGGGTGCAAATGTGGCAGAGGTCTATAGTTTGGCATTCTCTTCTACTGCTCGGTGGCTAGCAGTCTCGAGTGATAAGGGTACTGTCCATGTCTTCAGCCTTAAGGCTAACTCTAATTCTCCTCAGCATGAAAAATCACAGATTACAACCGATTCTCATGCTGCCAGTACACCGTCTAGCTCACCCCTTGCATTGGTTAAATTTAGAGGAGTGTTACCCAAGTACTTTAATTCAGAGCGGTCACTTGCTCAGTTTCGCTTACATGAGGGCACCTGTTATACTGTCGCATTTGGTCAGCAAGAGAATACAGTCATAATTCTTGGCATGGATGGGAGCTTCTACCGGTGTCAATTTGACCCAGTGCATGGCGGTGAGATGAATAAACTGGAATATCAGAACTTCTTAAAGCCAGAGATAGCCTCGTGA 1194 0.4807 MATVPASSSPPWSPNPDFDLDPSLPSPPNSSPQSHAPTTPSLLQLSFNQDQACFAAATDNGFRIYNCDPFRELFRREFDGGDGSTRGIGHVEMLFRYNMLALVGGGTNPQYPPSKVMIWDDHQSRCIGELSFRSAVRGVRLRRDRIIVVVEQKIFVYNFADFKLLHQIETIANPKGLCAVSQLAESMVLACPGLHKGQIRVEHYAQNKTKFFSAHDSRIACFALTLDGQLLTTASTKGTLIRIFDTADGTQLQEVRRGANVAEVYSLAFSSTARWLAVSSDKGTVHVFSLKANSNSPQHEKSQITTDSHAASTPSSSPLALVKFRGVLPKYFNSERSLAQFRLHEGTCYTVAFGQQENTVIILGMDGSFYRCQFDPVHGGEMNKLEYQNFLKPEIAS 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0236 397 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 38 390 - -
Lele08g0236 397 MobiDBLite consensus disorder prediction 1 40 - -
Lele08g0236 397 SMART WD40_4 248 289 IPR001680 GO:0005515
Lele08g0236 397 SMART WD40_4 28 66 IPR001680 GO:0005515
Lele08g0236 397 SMART WD40_4 334 373 IPR001680 GO:0005515
Lele08g0236 397 SMART WD40_4 205 245 IPR001680 GO:0005515
Lele08g0236 397 Gene3D - 38 379 IPR015943 GO:0005515
Lele08g0236 397 FunFam Autophagy-related protein 18a isoform A 40 376 - -
Lele08g0236 397 MobiDBLite consensus disorder prediction 294 316 - -
Lele08g0236 397 SUPERFAMILY WD40 repeat-like 39 373 IPR036322 GO:0005515
Lele08g0236 397 Pfam WD domain, G-beta repeat 258 288 IPR001680 GO:0005515
Lele08g0236 397 MobiDBLite consensus disorder prediction 9 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0236 Lele-ChrLele08 1420013 1424164 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0236 08 1420013 1424164 Lele08g0236 08 1420013 1424164 ECH
Lele07g0432 07 2441826 2448093 Lele08g0236 08 1420013 1424164 ECH
Lele05g0413 05 2353622 2364403 Lele08g0236 08 1420013 1424164 hybridization
Lele06g0231 06 1400092 1406809 Lele08g0236 08 1420013 1424164 hybridization