Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0222 ATGCAAGAGTCTAGAAGATGGCGTGAATCTGAATGAGCCCGTCGCTCGTCTTCTAAAACTATAACCCTAAATTCCATCTGTTCACTTCAATACGAGGTATCCCAGCTCGTTTCAAAGGGGAGGGGATGCTGGGCGATGAAATCTCTAGGTTCAACTGCAAGAAAAATGAGTAGACGTGCAAGCAGAACTGTCTACGTTGGGAATTTGCCGGGTGATATTCGTGAAAGAGAAGTGGAAGATCTGTTTCTAAAGTATGGACACATAACTCACATTGACTTGAAGGTTCCACCCAGACCCCCTGGGTATGCATTTGTAGAGTTTGAGGATGCTCAAGATGCTGAAGATGCAATTCGCGGTCGTGATGGCTATGATTTTGATGGACATCGGTTGAGGGTAGAGCCTGCACATGGTGGACGAGGTCATTCATCATCCAAGGATCGATATAGTAGTCACAGTAATGGTCGAGGTGGACGTGGGGTTTCTAGGCGCTCTGAGTACCGAGTACTAGTCACTGGGTTGCCCTCTTCTGCTTCCTGGCAGGATCTTAAAGATCACATGCGGAAAGCAGGAGATGTTTGTTTTTCTCAAATTTTTCATGATGGTAGAGGAACAACTGGGATTGTTGATTACACAAACTATGATGACATGAAATATGCTATCAAGAAGCTTGACGACTCTGAGTTCCGGAATGCATTTTCCAGAGCTTATGTTCGTGTGAGGGAATATGATTCGAGGCGGGACTCCTCTAGAAGTCCTAGTCGTGGCCGATCTCATTCTAGGGGGAGAAGTTATAGCCGCAGTCGTAGCCGTAGTTACAGTCGAGCACGTAGTCAGAGCAAATCTCCAAAGGGTAAATCTTCACAGCGTTCACCTGCTAGATCTCCTTCAAGATCTGTTTCGCTCTCACGTTCTCGCTCGAAGTCAAGGTCCCGTTCTTTGTCAGGATATGTATACTTGGAGCAAACTGGGAATTGGAAATTAGGAACTTGGTGGGATTTGGTTCAATTGCCTGCAACTCAATTTGTTGTGGAGATTGGGAATCAAGGAGATCATGGATTGCTATTTTAG 1068 0.4569 MQESRRWRESEXARRSSSKTITLNSICSLQYEVSQLVSKGRGCWAMKSLGSTARKMSRRASRTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSKDRYSSHSNGRGGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQIFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRAYVRVREYDSRRDSSRSPSRGRSHSRGRSYSRSRSRSYSRARSQSKSPKGKSSQRSPARSPSRSVSLSRSRSKSRSRSLSGYVYLEQTGNWKLGTWWDLVQLPATQFVVEIGNQGDHGLLF 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0222 355 Gene3D - 47 165 IPR012677 -
Lele08g0222 355 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 56 165 - -
Lele08g0222 355 CDD RRM2_SF2_plant_like 166 241 - -
Lele08g0222 355 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 137 IPR000504 GO:0003723
Lele08g0222 355 MobiDBLite consensus disorder prediction 119 162 - -
Lele08g0222 355 SMART rrm1_1 167 238 IPR000504 GO:0003723
Lele08g0222 355 SMART rrm1_1 63 133 IPR000504 GO:0003723
Lele08g0222 355 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 55 311 - -
Lele08g0222 355 Gene3D - 166 243 IPR012677 -
Lele08g0222 355 SUPERFAMILY RNA-binding domain, RBD 61 232 IPR035979 GO:0003676
Lele08g0222 355 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 168 230 IPR000504 GO:0003723
Lele08g0222 355 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 131 IPR000504 GO:0003723
Lele08g0222 355 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 244 IPR000504 GO:0003723
Lele08g0222 355 MobiDBLite consensus disorder prediction 246 306 - -
Lele08g0222 355 MobiDBLite consensus disorder prediction 255 269 - -
Lele08g0222 355 FunFam serine/arginine-rich splicing factor SR34A-like 166 243 - -
Lele08g0222 355 MobiDBLite consensus disorder prediction 270 306 - -
Lele08g0222 355 MobiDBLite consensus disorder prediction 119 163 - -
Lele08g0222 355 CDD RRM1_SF2_plant_like 63 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0222 Lele-ChrLele08 1332576 1338923 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0222 48 133 Eukaryotic Initiation Factors Gene Family AT3G11400 33.708 1.76e-06 47.4