Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0190 ATGGCCACCAGAAATCGAACTGTACTATTTAGAAAGCATAGAGATGCCGTCAAGAGTGTGCGAGCCCCTTTATCTTCGTCAGCTTCTGGTTCCGGCGGTCCCGTTATTGAAATGGTGAGCACCTCACTTCTTCGTTCGAATCCATCTTCATATGCTCCTCTAAGCACAGAAGATCCAGGTCCTTCGAGAGATGCATTTACTGTGGGGTTTCCACCAGCTTGGGTAGATGATTCTGAAGAAATAGCTGCAAATATACAACGTGCTCGGTCTAAAATGTCTGAGCTCGTCAAACTTCATGCAAAGGCATTAATGCCCTCTTTCGGTGATGGTAAAGAAGATCAACAACAGATTGAGATTCTCACCCAGGAGATTACAGCTCTCTTGAGAAAATCTGAGATGAACGTAAAAAGACTTTCTGCCACTGGCGGGTCTTCTGAGGATTCAAACGTTAGAAAAAATGTTCAGCGCTCCCTTGCTACCGACCTTCAGAACCTGTCAATGGACCTCCGGCGAAAGCAGTCACAATACTTGAAACGGTTGCAGCAGCAAAAGGAGGGATATGATGGGGTTGACTTGGAGATGAATGTGAATGGGTATAAATTTGGTTTACAGGATGATGGATTCAGTGATGTGGTCACTAAATCAGTGAATGAACTGGCTCAGATCATGAAGGACCTCTCTGTTCTTGTGATAGACCAGGGAACGATTGTGGATAGAATAGACTACAACATTCAGAATGTTGCTACGTCGGTTGAAGAGGGCTTTAAGCAGTTGGAGAAGGCTGAGAGAACACAGAAAAAAGGAGGAATGGTTATGTGTGCAACAGTGCTTGTTATAATGTGCTTAGTCATGCTAGTCCTCTTGATACTCAAGTCACTCTGCCAGCTATTACTAGTAATCTCTGGTTCATTTGCTGTAGCTATTGAATTGAATGTTCCCATCACATATCTCTCACATCAATGGCCGTGCATGGCAAGTCCAAGCATCGTAGTTGCAATTAAAGTAGTAAGCAGAAAGCAAGCTGGTTCTCCACTTATATATTCATCAGAGAGCATTAACTGCATCTGGCTAACCATTGACAAAAGTATAGGTGTTTTGATTTGTGTCATAAATGCAAAAATCAGTGGGGCATTAAGATAG 1140 0.4316 MATRNRTVLFRKHRDAVKSVRAPLSSSASGSGGPVIEMVSTSLLRSNPSSYAPLSTEDPGPSRDAFTVGFPPAWVDDSEEIAANIQRARSKMSELVKLHAKALMPSFGDGKEDQQQIEILTQEITALLRKSEMNVKRLSATGGSSEDSNVRKNVQRSLATDLQNLSMDLRRKQSQYLKRLQQQKEGYDGVDLEMNVNGYKFGLQDDGFSDVVTKSVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATSVEEGFKQLEKAERTQKKGGMVMCATVLVIMCLVMLVLLILKSLCQLLLVISGSFAVAIELNVPITYLSHQWPCMASPSIVVAIKVVSRKQAGSPLIYSSESINCIWLTIDKSIGVLICVINAKISGALR 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0190 379 PANTHER SYNTAXIN 77 281 IPR045242 -
Lele08g0190 379 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 212 261 IPR000727 -
Lele08g0190 379 Pfam SNARE domain 235 287 IPR000727 -
Lele08g0190 379 SMART tSNARE_6 198 261 IPR000727 -
Lele08g0190 379 CDD SNARE_syntaxin16 212 260 - -
Lele08g0190 379 Gene3D - 207 294 - -
Lele08g0190 379 Gene3D - 69 193 - -
Lele08g0190 379 SMART SynN_4 65 181 IPR006011 GO:0016020
Lele08g0190 379 SUPERFAMILY t-snare proteins 70 254 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0190 Lele-ChrLele08 1155960 1161742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0190 1 293 SNARE and Associated Proteins AT4G02195 65.528 1.82e-142 405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0190 08 1155960 1161742 Lele08g0190 08 1155960 1161742 ECH
Lele07g0384 07 2168058 2172196 Lele08g0190 08 1155960 1161742 ECH
Lele05g0366 05 2088487 2093860 Lele08g0190 08 1155960 1161742 hybridization
Lele06g0183 06 1117385 1124672 Lele08g0190 08 1155960 1161742 hybridization