Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0187 ATGGCCAAAGCCAATGCCAAGGAAAATTCCACTTCCGCTGCTCACCACCCTCCCTATTTCCATATGATATCGGACGCCATTTCTACGTTGAACGATCGCACGGGTTCCAGTCAGCAAGCAATTGCCAAGTTCATCGAGGACCAACACAAGCCCCTGCTGCCCCCAAATTTCAGGACTCTGCTTTCTTTTCAACTCAAGAAGTTTGTCAAGTCGGAGAGGCTGTTCAAGGTGAAGAATTCCTTCAAGATCTCCTCGGAGAACAAGAAGACCGCCAAACCACGTATGAAGGGTGAGACGCCTGCGCAGAAGGCTGCCAAGAAGATCACAGAGAAGGGGCTGAAGACCAAGAGGTTGAGTCACGTGAAGACACCGGAGGCTCTCCAGAAGGCCCGCAAGGATACTAAGAAGAAGTCGACAGCCTCGTCGGTTGGGAAAGACCGGAAAGTGAAGCACCTGAGTCAGGTTAAGTCTCCGGACGCAACGAAGAAGAAGACCAAAGTTACCCCTGTGAAGATCAAATCTACCAGGCCCGCGAGGAAGGCTAGGAAATAG 552 0.5145 MAKANAKENSTSAAHHPPYFHMISDAISTLNDRTGSSQQAIAKFIEDQHKPLLPPNFRTLLSFQLKKFVKSERLFKVKNSFKISSENKKTAKPRMKGETPAQKAAKKITEKGLKTKRLSHVKTPEALQKARKDTKKKSTASSVGKDRKVKHLSQVKSPDATKKKTKVTPVKIKSTRPARKARK 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0187 183 PANTHER HISTONE H1 7 179 - -
Lele08g0187 183 PRINTS Histone H5 signature 29 46 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele08g0187 183 PRINTS Histone H5 signature 162 181 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele08g0187 183 PRINTS Histone H5 signature 2 23 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele08g0187 183 SUPERFAMILY "Winged helix" DNA-binding domain 13 95 IPR036390 -
Lele08g0187 183 CDD H15 13 96 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele08g0187 183 Pfam linker histone H1 and H5 family 16 83 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele08g0187 183 MobiDBLite consensus disorder prediction 167 183 - -
Lele08g0187 183 MobiDBLite consensus disorder prediction 83 183 - -
Lele08g0187 183 MobiDBLite consensus disorder prediction 83 166 - -
Lele08g0187 183 Gene3D - 11 97 IPR036388 -
Lele08g0187 183 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 15 85 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele08g0187 183 SMART h15plus2 13 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0187 Lele-ChrLele08 1135734 1136374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0187 8 83 Single Myb Histone (SMH) Gene Family AT1G72740 39.474 5.02e-10 55.5